{"id":"W3210283185","doi":"10.3390/d13110529","title":"Transcriptome Comparison of Secondary Metabolite Biosynthesis Genes Expressed in Cultured and Lichenized Conditions of Cladonia rangiferina","year":2021,"lang":"en","type":"article","venue":"Diversity","topic":"Lichen and fungal ecology","field":"Agricultural and Biological Sciences","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Memorial University of Newfoundland","funders":"","keywords":"Secondary metabolite; Polyketide; Transcriptome; Gene; Biology; Gene cluster; Lichen; Metabolite; Genome; Metabolomics; Botany; Biosynthesis; Genetics; Biochemistry; Gene expression; Bioinformatics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009032216,0.000267327,0.0003263325,0.0003180726,0.0002657961,0.0003607866,0.000130343,0.0001511712,0.0005601846],"category_scores_gemma":[0.0001665124,0.0001288412,0.0003008778,0.0004016556,0.0001605337,0.0002599526,0.0002670425,0.0003148174,0.0001674558],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002678672,"about_ca_system_score_gemma":0.0002429086,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003122192,"about_ca_topic_score_gemma":0.003648144,"domain_scores_codex":[0.9998797,0.00001178154,0.00001121748,0.0000508487,0.00001789993,0.000028582],"domain_scores_gemma":[0.9998695,0.00003974669,0.00002472448,0.00001264008,0.00002406123,0.00002934235],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009888472,0.000009133535,0.001876639,0.00005207292,0.000004909532,0.00004577311,0.00011757,0.00009861237,0.9964957,0.0000205826,0.00001232541,0.00116793],"study_design_scores_gemma":[0.00001996122,0.000563537,0.6286966,0.0000621523,0.0001047326,0.0006387432,0.001702296,0.003335352,0.3601386,0.00009189343,0.00459716,0.00004899787],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970828,0.0002954706,0.0004155264,0.00001705934,0.00000525725,0.000009744585,0.001398743,0.00001316771,0.0007622634],"genre_scores_gemma":[0.988912,0.0003670043,0.001673542,0.00005318417,0.000005985205,0.00006442943,0.006000814,0.0000218025,0.002901212],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003122192,"threshold_uncertainty_score":0.006208003,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02536715479609906,"score_gpt":0.2369782719445938,"score_spread":0.2116111171484948,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}