{"id":"W3210283185","doi":"10.3390/d13110529","title":"Transcriptome Comparison of Secondary Metabolite Biosynthesis Genes Expressed in Cultured and Lichenized Conditions of Cladonia rangiferina","year":2021,"lang":"en","type":"article","venue":"Diversity","topic":"Lichen and fungal ecology","field":"Agricultural and Biological Sciences","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Memorial University of Newfoundland","funders":"","keywords":"Secondary metabolite; Polyketide; Transcriptome; Gene; Biology; Gene cluster; Lichen; Metabolite; Genome; Metabolomics; Botany; Biosynthesis; Genetics; Biochemistry; Gene expression; Bioinformatics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007740008,0.0000683379,0.0002944851,0.000014181,0.00009303496,0.000005723783,0.0001026002,0.00008368392,0.0004251162],"category_scores_gemma":[0.00002461934,0.00003380591,0.00006849376,0.0001958462,0.00009557976,0.00007360343,0.0001161347,0.00006180441,0.000001260646],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000005937359,"about_ca_system_score_gemma":0.000008161952,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000275122,"about_ca_topic_score_gemma":0.0004874678,"domain_scores_codex":[0.9994107,0.0001013866,0.0001547689,0.0001501169,0.0000765046,0.0001065594],"domain_scores_gemma":[0.9996658,0.0001157308,0.00006301752,0.00003475249,0.00007783374,0.00004284611],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004399749,0.0001401708,0.1496587,0.00001549263,0.00002842943,0.000003276043,0.0007892531,5.787712e-7,0.8465897,0.0002693694,0.0000608199,0.002400179],"study_design_scores_gemma":[0.0003828843,0.00004052543,0.7113118,0.000006396589,0.00003508304,8.721277e-7,0.002191743,0.00000943777,0.2832223,0.0001138598,0.002614087,0.00007103698],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973884,0.001188262,0.000001033018,0.0003822837,0.00004414006,0.00006662771,0.0005057544,0.000009446228,0.0004140296],"genre_scores_gemma":[0.9995318,0.0001777886,0.000107262,0.00005830158,0.00001151213,0.000001469908,0.00006379506,2.976629e-7,0.00004773957],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5633674,"threshold_uncertainty_score":0.4654725,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02536715479609906,"score_gpt":0.2369782719445938,"score_spread":0.2116111171484948,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}