{"id":"W3210643297","doi":"10.1158/1055-9965.epi-21-0463","title":"Molecular and Pathology Features of Colorectal Tumors and Patient Outcomes Are Associated with <i>Fusobacterium nucleatum</i> and Its Subspecies <i>animalis</i>","year":2021,"lang":"en","type":"article","venue":"Cancer Epidemiology Biomarkers & Prevention","topic":"Diverticular Disease and Complications","field":"Medicine","cited_by":59,"is_retracted":false,"has_abstract":true,"ca_institutions":"Centre Hospitalier Universitaire Sainte-Justine; Lunenfeld-Tanenbaum Research Institute; University Health Network; Ontario Institute for Cancer Research","funders":"National Cancer Institute; National Institutes of Health; Österreichische Forschungsförderungsgesellschaft; Cancer Research UK","keywords":"Fusobacterium nucleatum; Fusobacterium; Subspecies; Medicine; Pathology; Bacteroidaceae; Colorectal cancer; Internal medicine; Biology; Cancer; Bacteria; Genetics; Bacteroides; Zoology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002085316,0.0001601523,0.0005260995,0.0000619243,0.00007086321,0.000007843151,0.00003308511,0.0001248814,0.00001865361],"category_scores_gemma":[0.0005346984,0.0001307953,0.00007581781,0.0001338804,0.0002799957,0.00006562679,0.00008299352,0.00009723672,3.584261e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004410704,"about_ca_system_score_gemma":0.00007857933,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002006997,"about_ca_topic_score_gemma":0.00009034612,"domain_scores_codex":[0.99867,0.0003627815,0.0002933399,0.0003852874,0.00008223278,0.0002063667],"domain_scores_gemma":[0.99905,0.0001861872,0.000265781,0.0001372598,0.0002268134,0.0001339351],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003361563,0.0001735067,0.9536908,0.0001033606,0.0007780668,0.0001125474,0.0001476026,0.000001205019,0.04119249,0.0009243939,0.0007804389,0.0017594],"study_design_scores_gemma":[0.00101631,0.0002815523,0.9904579,0.0003135081,0.0004702132,0.0001413173,0.0002846963,0.00002646359,0.006201235,0.0005497336,0.0001328,0.0001242736],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9738678,0.02078524,0.00002804522,0.004746908,0.00005381374,0.0003034897,0.00007148619,0.00002526729,0.0001179977],"genre_scores_gemma":[0.9973692,0.0007513118,0.0002424127,0.001382459,0.000005963098,0.00007303347,0.0001042248,0.00001401544,0.00005737343],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03676707,"threshold_uncertainty_score":0.5333676,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01907433114307187,"score_gpt":0.2864014230060458,"score_spread":0.2673270918629739,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}