{"id":"W3210862272","doi":"10.1038/s43705-021-00066-4","title":"Xylan utilisation promotes adaptation of <i>Bifidobacterium pseudocatenulatum</i> to the human gastrointestinal tract","year":2021,"lang":"en","type":"article","venue":"ISME Communications","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics","keywords":"Biology; Xylose; Human gastrointestinal tract; Xylanase; Bifidobacterium; Gut flora; Prebiotic; Inulin; Bacteroides; Horizontal gene transfer; Microbiology; Polysaccharide; Gastrointestinal tract; Biochemistry; Gene; Bacteria; Genetics; Enzyme; Phylogenetics; Lactobacillus; Fermentation","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001782241,0.00007814803,0.00008381313,0.00002345115,0.0002246896,0.00002079372,0.0003944125,0.00003820427,0.00001371167],"category_scores_gemma":[0.00009001354,0.00006927636,0.000051038,0.0001315961,0.0000718471,0.00000432658,0.000178126,0.0001080199,0.00001189206],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000122558,"about_ca_system_score_gemma":0.0001436852,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001201912,"about_ca_topic_score_gemma":0.0006861143,"domain_scores_codex":[0.9992854,0.0001535722,0.0002262297,0.0001471982,0.00006089079,0.000126702],"domain_scores_gemma":[0.9984692,0.00002388893,0.0001009941,0.001115681,0.0002437378,0.00004644614],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000004973683,0.0001448388,0.004815084,0.00001205262,0.000006142044,2.780289e-7,0.0003897091,0.00005051517,0.9925606,0.0005105607,0.0007534224,0.0007518437],"study_design_scores_gemma":[0.0008510333,0.0007455574,0.6140316,0.0002129039,0.00008650789,0.0004033392,0.002345779,0.00106558,0.2789589,0.0003707779,0.1004855,0.0004425568],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9869413,0.0003732598,0.003519396,0.007785827,0.00003977268,0.0002412402,0.00004568119,0.00001275369,0.001040761],"genre_scores_gemma":[0.9901772,0.00005724614,0.008332696,0.0003120242,0.00004880002,0.00002405375,0.0007978743,0.00001112825,0.00023898],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7136016,"threshold_uncertainty_score":0.2825008,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04914968562401775,"score_gpt":0.3117935706379678,"score_spread":0.2626438850139501,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}