{"id":"W3210862272","doi":"10.1038/s43705-021-00066-4","title":"Xylan utilisation promotes adaptation of <i>Bifidobacterium pseudocatenulatum</i> to the human gastrointestinal tract","year":2021,"lang":"en","type":"article","venue":"ISME Communications","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics","keywords":"Biology; Xylose; Human gastrointestinal tract; Xylanase; Bifidobacterium; Gut flora; Prebiotic; Inulin; Bacteroides; Horizontal gene transfer; Microbiology; Polysaccharide; Gastrointestinal tract; Biochemistry; Gene; Bacteria; Genetics; Enzyme; Phylogenetics; Lactobacillus; Fermentation","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001187299,0.0002723955,0.0002122119,0.0001210204,0.000142965,0.0003351223,0.0001082317,0.0002375965,0.0009050494],"category_scores_gemma":[0.0002180362,0.0001422976,0.0002095659,0.0001314508,0.0001275594,0.0001569946,0.0003948068,0.0003049166,0.0001921967],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001438036,"about_ca_system_score_gemma":0.000188253,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001843276,"about_ca_topic_score_gemma":0.001978069,"domain_scores_codex":[0.9998778,0.0000205612,0.000009376597,0.00003194905,0.00002542315,0.00003488244],"domain_scores_gemma":[0.999912,0.00001078226,0.00002353143,0.000008552083,0.00001672171,0.00002850925],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002298977,0.00003746991,0.002591007,0.00003364468,0.000005125802,0.00004739288,0.00003145494,0.00001528854,0.9955263,0.00001769104,0.00003668393,0.001428093],"study_design_scores_gemma":[0.00003675583,0.003106677,0.3715259,0.00004471553,0.00007973549,0.0008858528,0.0007742267,0.001091694,0.6177969,0.0001118897,0.004524776,0.00002089122],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998744,0.0004128646,0.0002294112,0.00005783451,0.00001085069,0.00001080798,0.0001009425,0.00001125662,0.000421945],"genre_scores_gemma":[0.9977105,0.0003415843,0.0006859677,0.00008389537,0.000007017469,0.00001532226,0.0003691171,0.000007889404,0.0007786484],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001843276,"threshold_uncertainty_score":0.00366509,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04914968562401775,"score_gpt":0.3117935706379678,"score_spread":0.2626438850139501,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}