{"id":"W3211041403","doi":"10.1371/journal.pone.0259529","title":"Quantitative nuclear phenotype signatures predict nodal disease in oral squamous cell carcinoma","year":2021,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Head and Neck Cancer Studies","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"BC Cancer Foundation; Terry Fox Research Institute","keywords":"NODAL; Phenotype; Basal cell; Biology; Pathology; Medicine; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004619351,0.0003198808,0.0002177353,0.0004583924,0.000111672,0.0003099375,0.0001507575,0.0001979483,0.000437115],"category_scores_gemma":[0.001234461,0.00008622376,0.0002563059,0.0002041767,0.0002024214,0.0001689678,0.0001905486,0.0001650664,0.0001445989],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002317664,"about_ca_system_score_gemma":0.0002069532,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00153918,"about_ca_topic_score_gemma":0.002059636,"domain_scores_codex":[0.9999245,0.00001938039,0.000006436653,0.00001649532,0.00002263581,0.00001044451],"domain_scores_gemma":[0.999643,0.000156037,0.00009223037,0.00002401981,0.00005914125,0.00002565484],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005753399,0.0001014719,0.922532,0.00005523951,0.00006539478,0.00009545068,0.00005976718,0.02642763,0.01553468,0.00007946444,0.000228636,0.03424492],"study_design_scores_gemma":[0.00004262592,0.0005711078,0.7739728,0.00002505691,0.0001123072,0.0005749162,0.000126397,0.2161302,0.007162208,0.0007443901,0.0005162104,0.00002176832],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9958169,0.0001771802,0.00363214,0.00002539513,0.000002940142,0.00001151208,0.00008908736,0.00002568899,0.000219191],"genre_scores_gemma":[0.998889,0.00003165684,0.0008979726,0.000002996722,0.000001868733,0.000004869289,0.000121939,0.000001982695,0.00004766457],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00153918,"threshold_uncertainty_score":0.0030604,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04334443338318038,"score_gpt":0.268444131835012,"score_spread":0.2250996984518316,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}