{"id":"W3211172340","doi":"10.3390/toxins13110755","title":"Identification of Shiga-Toxin-Producing Shigella Infections in Travel and Non-Travel Related Cases in Alberta, Canada","year":2021,"lang":"en","type":"article","venue":"Toxins","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"Stollery Children's Hospital; Alberta Children's Hospital; Provincial Laboratory of Public Health; Women and Children’s Health Research Institute; University of Calgary; University of Alberta","funders":"","keywords":"Shigella; Shiga toxin; Serotype; Shigella flexneri; Phylogenetic tree; Biology; Shigella dysenteriae; Clade; Shigellosis; Microbiology; Virology; Escherichia coli; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001818631,0.0000888151,0.0001439813,0.00005585337,0.00004411618,0.00001012081,0.00006073844,0.00006976102,0.000008322827],"category_scores_gemma":[0.000712115,0.00009783041,0.00002151524,0.0002823601,0.00005372514,0.000004377694,0.00008208727,0.000117002,6.146681e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004755027,"about_ca_system_score_gemma":0.0004745577,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.3116966,"about_ca_topic_score_gemma":0.9540647,"domain_scores_codex":[0.9990959,0.00006486117,0.0002700332,0.0002880564,0.0001000101,0.0001810975],"domain_scores_gemma":[0.9995462,0.00005985326,0.00005366459,0.0002234796,0.00007463916,0.00004218792],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001059567,0.00008504005,0.06280969,0.00004423084,0.00002689145,0.0000262048,0.0003398106,0.00009555194,0.9361913,0.000051695,0.0001434191,0.0001755329],"study_design_scores_gemma":[0.0003716152,0.00004999754,0.5044973,0.00003122265,0.0000067857,0.00002417825,0.0005845911,0.0001786607,0.4939586,0.00002918585,0.0001556248,0.000112254],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980916,0.0004555166,0.00002305229,0.0003673116,0.00006032234,0.0001275223,0.00001510327,0.000001292384,0.0008583284],"genre_scores_gemma":[0.9981006,0.0004117473,0.00003315927,0.00003667739,0.00001996273,0.0000200218,0.00002945242,0.00001000218,0.001338355],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6423681,"threshold_uncertainty_score":0.6928868,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009779139824679393,"score_gpt":0.259638107058559,"score_spread":0.2498589672338796,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}