{"id":"W3211310338","doi":"10.1093/cid/ciab761","title":"Clinical and Infection Prevention Applications of Severe Acute Respiratory Syndrome Coronavirus 2 Genotyping: An Infectious Diseases Society of America/American Society for Microbiology Consensus Review Document","year":2021,"lang":"en","type":"review","venue":"Clinical Infectious Diseases","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary; University of British Columbia; Providence Health Care","funders":"Centers for Disease Control and Prevention","keywords":"Genotyping; Medicine; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Coronavirus; Coronavirus disease 2019 (COVID-19); Pandemic; Virology; Genotype; Infectious disease (medical specialty); Disease; Biology; Genetics; Internal medicine; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001968192,0.0007082728,0.001533345,0.003025406,0.0002754267,0.001453255,0.0009869353,0.00140945,0.004363213],"category_scores_gemma":[0.002885569,0.000294601,0.001260669,0.00227709,0.0003567306,0.001215776,0.0007575752,0.001765638,0.002388428],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008522613,"about_ca_system_score_gemma":0.00384428,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001786587,"about_ca_topic_score_gemma":0.002824075,"domain_scores_codex":[0.9993663,0.000140713,0.0001348275,0.00007356759,0.000242123,0.00004243403],"domain_scores_gemma":[0.998273,0.0007373863,0.0002208899,0.00003352704,0.000648982,0.00008629137],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00005836899,0.00003881296,0.0001676748,0.03023879,0.0001388255,0.00007626725,0.00004985522,0.0001397311,0.0006042688,0.001975589,0.06576172,0.9007502],"study_design_scores_gemma":[0.00002157823,0.00007216729,0.0006696878,0.02220797,0.0003019595,0.0004983724,0.00005517919,0.00005832204,0.0002467202,0.0008488976,0.9750028,0.00001635065],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.00006008194,0.9968129,0.0001256028,0.001153641,0.0005113595,0.00001695971,0.00005213243,0.000009653182,0.00125765],"genre_scores_gemma":[0.0003142871,0.9982993,0.0002665261,0.0005027491,0.0001630488,0.0000149542,0.00006222497,0.000002078883,0.0003748355],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.004363213,"threshold_uncertainty_score":0.0145964,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1271457629899393,"score_gpt":0.5046060125382544,"score_spread":0.3774602495483151,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}