{"id":"W3211402536","doi":"10.1093/nar/gkab1028","title":"The reactome pathway knowledgebase 2022","year":2021,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2542,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"National Institute of General Medical Sciences; National Cancer Institute; National Institutes of Health; National Human Genome Research Institute; University of Toronto; European Bioinformatics Institute","keywords":"Biology; Computational biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001785884,0.003475761,0.002120843,0.008543458,0.001130929,0.003886019,0.003709633,0.001953387,0.05647789],"category_scores_gemma":[0.004740725,0.001598477,0.003230341,0.006976609,0.0004590691,0.001925721,0.003282035,0.002335356,0.04636237],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001412141,"about_ca_system_score_gemma":0.004334695,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006544735,"about_ca_topic_score_gemma":0.007075102,"domain_scores_codex":[0.9987992,0.0001880069,0.0001678496,0.0003617828,0.0003729996,0.0001100512],"domain_scores_gemma":[0.9986238,0.0004661443,0.0001801224,0.0003077885,0.0002814552,0.0001407275],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00119347,0.0001595788,0.003658726,0.01575157,0.001398353,0.001389057,0.0002632099,0.02036317,0.01194598,0.04106445,0.7944171,0.1083954],"study_design_scores_gemma":[0.0002528924,0.00004697705,0.00211118,0.00118718,0.0004422833,0.0009105381,0.00008182901,0.01132023,0.006743241,0.03297296,0.9438111,0.0001196575],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"software","genre_scores_codex":[0.002112616,0.005637595,0.04797061,0.0007580471,0.0003449178,0.0003891744,0.8804011,0.04422078,0.0181651],"genre_scores_gemma":[0.008201502,0.004417643,0.0318536,0.0004845418,0.00006002544,0.0007741985,0.9467857,0.003597588,0.003825172],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.05647789,"threshold_uncertainty_score":0.1889374,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02636071070354901,"score_gpt":0.312288632364832,"score_spread":0.285927921661283,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}