{"id":"W3211825579","doi":"10.1128/aem.01707-21","title":"Fucosylated Human Milk Oligosaccharide Foraging within the Species Bifidobacterium pseudocatenulatum Is Driven by Glycosyl Hydrolase Content and Specificity","year":2021,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Infant Nutrition and Health","field":"Nursing","cited_by":38,"is_retracted":false,"has_abstract":true,"ca_institutions":"Alberta Glycomics Centre; University of Alberta","funders":"National Institute of Environmental Health Sciences; National Center for Complementary and Integrative Health; National Institute of Diabetes and Digestive and Kidney Diseases; University of California, Davis; National Institutes of Health","keywords":"Glycoside hydrolase; Bifidobacterium longum; Enzyme; Bifidobacterium; Oligosaccharide; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001120199,0.0002398549,0.0003047639,0.00003814088,0.0005231153,0.00005624407,0.00009934951,0.0001549478,0.0002257861],"category_scores_gemma":[0.000001797297,0.0001961897,0.00004772333,0.00005393678,0.0003895131,0.00004997946,0.0001404185,0.0002956463,0.00003410003],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008142771,"about_ca_system_score_gemma":0.000006187131,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005721992,"about_ca_topic_score_gemma":0.00002932491,"domain_scores_codex":[0.9986841,0.00006863215,0.0003407497,0.0004848079,0.00005145289,0.0003702697],"domain_scores_gemma":[0.9994983,0.00003650274,0.0001314928,0.0002243082,0.000005647209,0.0001037366],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009718155,0.00009329629,0.003073762,0.00002368849,0.00002975191,0.000008249626,0.0008961076,7.258358e-7,0.9915857,0.0003708973,0.003616124,0.0002045704],"study_design_scores_gemma":[0.002423177,0.0001673637,0.01507706,0.00003048733,0.00007134945,0.0004650583,0.004076241,0.00007678604,0.917763,0.0005674103,0.05879392,0.0004881698],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9938267,0.0009051636,0.00001205828,0.003949366,0.0002397402,0.0002316468,0.0004640493,0.00003491065,0.0003363325],"genre_scores_gemma":[0.9921916,0.0003881871,0.00009932502,0.006147955,0.00008262957,0.00001444203,0.0008215455,0.00002433868,0.0002300018],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07382268,"threshold_uncertainty_score":0.8000385,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01569026499689281,"score_gpt":0.2094730436446684,"score_spread":0.1937827786477756,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}