{"id":"W3211954006","doi":"10.1128/mra.00841-21","title":"Complete Genome Sequence of Staphylococcus aureus PS/BAC/169/17/W, Isolated from a Contaminated Platelet Concentrate in England","year":2021,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Blood Services; Health Canada; University of Ottawa","funders":"Health Canada; Government of Canada; Canadian Blood Services","keywords":"Staphylococcus aureus; Whole genome sequencing; Genome; Plasmid; Strain (injury); Sequence (biology); Contamination; Chromosome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000330403,0.000493703,0.001257009,0.0002163137,0.0001121187,0.00002966438,0.0003824467,0.000456502,0.0006096119],"category_scores_gemma":[0.0001390877,0.0004899735,0.0001804792,0.0007618009,0.0006469698,0.00007997286,0.0002207599,0.0006312648,0.00007759657],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003279863,"about_ca_system_score_gemma":0.0003949084,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003373889,"about_ca_topic_score_gemma":0.000475577,"domain_scores_codex":[0.9963874,0.0003635177,0.001139557,0.00096905,0.0001860411,0.0009544786],"domain_scores_gemma":[0.997897,0.0002098841,0.0004745781,0.0007580003,0.0004804003,0.0001801588],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001738286,0.0003617071,0.04334204,0.00008503917,0.0004052414,0.001462515,0.001145086,0.00005625368,0.9499536,0.000009231006,0.001178385,0.0002625738],"study_design_scores_gemma":[0.01426445,0.0007333881,0.01234667,0.0007426196,0.000163349,0.0001481529,0.0007868921,0.0001609087,0.04685625,0.00004003552,0.9230235,0.0007338072],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9804876,0.002055558,0.0001743927,0.0003588528,0.0001822259,0.0008494661,0.01506909,0.0000664672,0.000756312],"genre_scores_gemma":[0.9744825,0.0002529145,0.0004705125,0.001782621,0.00008796466,0.00002913825,0.02129337,0.00005687622,0.001544087],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9218451,"threshold_uncertainty_score":0.9997552,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02354961825880379,"score_gpt":0.2624396296456251,"score_spread":0.2388900113868213,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}