{"id":"W3212237750","doi":"10.3389/fmars.2021.744052","title":"Genomic Perspectives on Aeromonas salmonicida subsp. salmonicida Strain 890054 as a Model System for Pathogenicity Studies and Mitigation of Fish Infections","year":2021,"lang":"en","type":"article","venue":"Frontiers in Marine Science","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institut universitaire de cardiologie et de pneumologie de Québec; Université Laval","funders":"Genome Canada; Canadian Institutes of Health Research; Natural Sciences and Engineering Research Council of Canada; Ministère de l'Agriculture, des Pêcheries et de l'Alimentation; Fonds de recherche du Québec – Nature et technologies; Université Laval; National Science Foundation","keywords":"Aeromonas salmonicida; Biology; Plasmid; Aquaculture; Microbiology; Aeromonas; Virulence; Genome; Pathogenicity island; Bacteria; Gene; Fishery; Genetics; Fish <Actinopterygii>","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004235837,0.0001645016,0.0003081968,0.0002096105,0.0002736487,0.00002591875,0.0001977399,0.00008103704,0.000008809115],"category_scores_gemma":[0.000217148,0.0001544505,0.00008212685,0.0003837804,0.0006875329,0.0001442565,0.0002862138,0.000132385,0.000003039166],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003051375,"about_ca_system_score_gemma":0.0001838764,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002797771,"about_ca_topic_score_gemma":0.00007162465,"domain_scores_codex":[0.9987865,0.00007504653,0.0002592166,0.0005220406,0.00005479166,0.0003023934],"domain_scores_gemma":[0.9993588,0.00004714232,0.0001258765,0.0002324757,0.0002091597,0.00002652059],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002013637,0.0003097091,0.02502667,0.000293944,0.0002931754,0.00001117703,0.006086673,0.000824685,0.9472381,0.01380312,0.002087824,0.003823584],"study_design_scores_gemma":[0.009809686,0.001417325,0.2266182,0.000841425,0.0008485522,0.0001667979,0.2719617,0.004276181,0.4644417,0.01580954,0.001911386,0.001897517],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.995365,0.001512998,0.001170206,0.0002088065,0.0004660648,0.0004466466,0.0001126226,0.00003337698,0.0006842324],"genre_scores_gemma":[0.9947928,0.000235662,0.00396425,0.00006988863,0.00001217028,0.00004607485,0.00006176729,0.000009255506,0.000808181],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4827963,"threshold_uncertainty_score":0.6298309,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.010672903105139,"score_gpt":0.2519229553789981,"score_spread":0.2412500522738591,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}