{"id":"W3212260247","doi":"10.3390/jof7110979","title":"Transmission and Colonization of Pneumocystis jirovecii","year":2021,"lang":"en","type":"review","venue":"Journal of Fungi","topic":"Pneumocystis jirovecii pneumonia detection and treatment","field":"Medicine","cited_by":47,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"","keywords":"Pneumocystis jirovecii; Biology; Transmission (telecommunications); Colonization; Genome; Asymptomatic; Disease; Immunology; Virology; Human immunodeficiency virus (HIV); Genetics; Microbiology; Medicine; Gene; Pathology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000446112,0.0004498636,0.0008297074,0.001728029,0.0002447919,0.0006934977,0.0004162587,0.0006727044,0.001275882],"category_scores_gemma":[0.0009595623,0.0002213056,0.0004190772,0.001216421,0.0004287711,0.000884925,0.0003563289,0.0007599834,0.000449678],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004574084,"about_ca_system_score_gemma":0.001337679,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002011185,"about_ca_topic_score_gemma":0.002489081,"domain_scores_codex":[0.9997476,0.00005512117,0.00005777922,0.00004335291,0.00007423677,0.00002184975],"domain_scores_gemma":[0.999668,0.0001798572,0.00006333354,0.000008483135,0.00006116426,0.00001927431],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00009724732,0.00005585493,0.001278671,0.05293148,0.0001612572,0.0006030698,0.000181745,0.0002019844,0.001277318,0.00241794,0.01936349,0.9214299],"study_design_scores_gemma":[0.00002689517,0.0002132038,0.009310102,0.02694722,0.0003731972,0.01068288,0.0002261624,0.0001474362,0.001040113,0.001478863,0.9495096,0.0000442319],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001963594,0.9992039,0.00002232785,0.0001369485,0.0000813914,0.000002109321,0.000007499983,0.000001710538,0.0003478331],"genre_scores_gemma":[0.001143041,0.9985608,0.00003727116,0.00007013735,0.00008477535,0.000002493148,0.000009549888,3.540186e-7,0.00009151369],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002011185,"threshold_uncertainty_score":0.004268229,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03203759316600954,"score_gpt":0.3340961687815968,"score_spread":0.3020585756155873,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}