{"id":"W3212264393","doi":"10.3390/antibiotics10111408","title":"Complete Genome Sequences of Klebsiella michiganensis and Citrobacter farmeri, KPC-2-Producers Serially Isolated from a Single Patient","year":2021,"lang":"en","type":"article","venue":"Antibiotics","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; McGill Genome Centre; Université Laval","funders":"Canada First Research Excellence Fund; Compute Canada; Université Laval","keywords":"Plasmid; Citrobacter; Transposition (logic); Biology; Mobile genetic elements; Whole genome sequencing; Microbiology; Klebsiella pneumoniae; Genome; Citrobacter freundii; Genetics; Enterobacteriaceae; Gene; Klebsiella oxytoca; Klebsiella; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005993184,0.0002191095,0.0003200243,0.00002915833,0.00006250305,0.0000523102,0.0001454331,0.000177739,0.0000553576],"category_scores_gemma":[0.00007120508,0.0002211702,0.00008452592,0.000112246,0.0002449469,0.000006717248,0.0001748559,0.00007922205,0.000007105741],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000125979,"about_ca_system_score_gemma":0.00009942488,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005593542,"about_ca_topic_score_gemma":0.00007085814,"domain_scores_codex":[0.9985873,0.00008352489,0.000385077,0.0005360279,0.0001347217,0.0002733919],"domain_scores_gemma":[0.9989936,0.00002193503,0.0002053467,0.0004905329,0.0002064395,0.00008208428],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009556821,0.00008387534,0.009614722,0.00003719057,0.0001366669,0.0000266646,0.0001251763,0.00001866166,0.9893942,0.00001211474,0.00009217754,0.0003629716],"study_design_scores_gemma":[0.0003560921,0.0003610802,0.01939199,0.00006265597,0.00007045859,0.00003348221,0.0003266376,0.0000407864,0.9724143,0.00004685337,0.006582031,0.0003136977],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997253,0.001081818,0.0004804205,0.0001749517,0.0003100597,0.0001231684,0.0003135728,0.00001270314,0.0002502897],"genre_scores_gemma":[0.9895006,0.0006499397,0.00874833,0.0002809444,0.000132345,9.613854e-8,0.0005406209,0.00003230922,0.0001148263],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01697998,"threshold_uncertainty_score":0.9019057,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01187918083884494,"score_gpt":0.2131974301015301,"score_spread":0.2013182492626852,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}