{"id":"W3212880719","doi":"10.3389/fimmu.2021.780910","title":"Differential Signature of the Microbiome and Neutrophils in the Oral Cavity of HIV-Infected Individuals","year":2021,"lang":"en","type":"article","venue":"Frontiers in Immunology","topic":"HIV/AIDS oral health manifestations","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Faculty of Medicine and Dentistry, University of Alberta; Canadian Institutes of Health Research; University of Alberta","keywords":"Saliva; Oral Microbiome; Treponema denticola; Microbiome; Biology; Immunology; Treponema; Immune system; Periodontitis; Microbiology; Human immunodeficiency virus (HIV); Medicine; Porphyromonas gingivalis; Internal medicine; Syphilis; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001646798,0.0001001303,0.0003885412,0.0001871126,0.00003802617,0.00000338991,0.0001615749,0.0001890742,0.00002081999],"category_scores_gemma":[0.0001838142,0.00006542607,0.00005180395,0.0005823942,0.0003586491,0.00003268592,0.0000970078,0.0004924044,2.715874e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004762948,"about_ca_system_score_gemma":0.0001737211,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001654232,"about_ca_topic_score_gemma":0.0001406989,"domain_scores_codex":[0.9986829,0.0004917046,0.0003563603,0.0001594641,0.00009817183,0.0002113937],"domain_scores_gemma":[0.9993297,0.0001101452,0.0001353673,0.0003358189,0.0000715748,0.00001743261],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002266793,0.0006194475,0.8429701,0.0002558522,0.0001499088,0.00005414025,0.005852249,0.000005307596,0.1395755,0.001006627,0.006339463,0.002944697],"study_design_scores_gemma":[0.001870716,0.0001458301,0.9893422,0.0001032064,0.00006021196,0.00007925677,0.001214787,0.0000248437,0.005785667,0.0005671667,0.0007458831,0.0000603076],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9941621,0.001661168,0.00009346288,0.003149697,0.0004214314,0.0003701703,0.00006943839,0.000005681187,0.00006682622],"genre_scores_gemma":[0.9982898,0.0001477554,0.001124487,0.0001879406,0.0000150249,0.0000119097,0.00007173946,0.000006922723,0.0001444339],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.146372,"threshold_uncertainty_score":0.2667997,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009928280122191135,"score_gpt":0.2643967153402225,"score_spread":0.2544684352180313,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}