{"id":"W3212948593","doi":"10.1101/2021.11.05.467470","title":"ANI, Mash and Dashing equally differentiate between <i>Klebsiella</i> species","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Wilfrid Laurier University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Klebsiella; Genome; Biology; Ecological niche; Genus; Niche; Evolutionary biology; Zoology; Ecology; Genetics; Escherichia coli; Habitat; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004094874,0.001212873,0.00126801,0.002963664,0.001170582,0.003320578,0.0006152614,0.001069872,0.002671093],"category_scores_gemma":[0.00935658,0.0004500411,0.001568803,0.002020556,0.00079551,0.001677685,0.001539637,0.00116398,0.002129947],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005803262,"about_ca_system_score_gemma":0.0005587366,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001687328,"about_ca_topic_score_gemma":0.002325014,"domain_scores_codex":[0.9966028,0.0008116516,0.0004354843,0.001029673,0.0007106796,0.0004096531],"domain_scores_gemma":[0.9920223,0.002682601,0.00172515,0.00090108,0.00195474,0.0007141905],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.005810095,0.0006350304,0.2748539,0.001740985,0.00112368,0.0002934619,0.001123241,0.004874965,0.6085776,0.00136882,0.003585827,0.09601238],"study_design_scores_gemma":[0.0001715381,0.002563657,0.5640657,0.0004156897,0.001055025,0.001423651,0.002003467,0.06391856,0.333604,0.004647822,0.02578687,0.0003440427],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9521254,0.001854151,0.03386471,0.0003188051,0.0001736379,0.0001844411,0.004997873,0.001362112,0.005118781],"genre_scores_gemma":[0.9027315,0.0004023233,0.08159968,0.0002824445,0.00006090084,0.0001606696,0.01253624,0.0004768549,0.001749462],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004094874,"threshold_uncertainty_score":0.02165598,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01576621921504704,"score_gpt":0.2082267802466934,"score_spread":0.1924605610316464,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}