{"id":"W3213123536","doi":"10.3390/v13112252","title":"Trans-Activator Binding Site Context in RCNMV Modulates Subgenomic mRNA Transcription","year":2021,"lang":"en","type":"article","venue":"Viruses","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"York University","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Ontario","keywords":"Subgenomic mRNA; Transcription (linguistics); RNA; Messenger RNA; Biology; Molecular biology; Capsid; Activator (genetics); Binding site; Cell biology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001442757,0.0001299782,0.0002035683,0.00002530687,0.000156938,0.00007230214,0.0001254017,0.00006629091,0.0004825463],"category_scores_gemma":[0.00004618184,0.00005632033,0.00007388231,0.0003673852,0.00005335431,0.0002474675,0.00002902998,0.0001360181,0.0001100927],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004992501,"about_ca_system_score_gemma":0.00001287392,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001145082,"about_ca_topic_score_gemma":0.00475263,"domain_scores_codex":[0.9989028,0.0001107247,0.0001865681,0.0002834846,0.000182043,0.0003344021],"domain_scores_gemma":[0.9996168,0.0002081824,0.00003063578,0.00003952911,0.00003481236,0.00007003034],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004758111,0.00006245563,0.009866427,0.000006976417,0.00001620821,0.00003402225,0.0002009925,0.000003596883,0.9627616,0.00002324165,0.0002989338,0.02667792],"study_design_scores_gemma":[0.0002868589,0.00008164926,0.1581661,0.00006080419,0.000007346642,0.000006984395,0.0005171569,0.00007977355,0.7194725,0.00008939244,0.120989,0.0002424286],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9959961,0.002392162,0.000001957159,0.000606094,0.00006854869,0.0001283584,0.0005602112,0.00005186501,0.0001947723],"genre_scores_gemma":[0.9977338,0.001635216,0.00002055224,0.0002786121,0.00007946627,0.00001789697,0.00008375302,0.00000127061,0.0001494724],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2432892,"threshold_uncertainty_score":0.5283544,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07292698474714375,"score_gpt":0.2710897918133217,"score_spread":0.1981628070661779,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}