{"id":"W3213390895","doi":"10.1021/jasms.1c00240","title":"Holistic Characterization of a <i>Salmonella</i> Typhimurium Infection Model Using Integrated Molecular Imaging","year":2021,"lang":"en","type":"article","venue":"Journal of the American Society for Mass Spectrometry","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"Biotechnology and Biological Sciences Research Council; Science for Life Laboratory; Vetenskapsrådet; Stiftelsen för Strategisk Forskning","keywords":"Mass spectrometry imaging; Immune system; Chemistry; Salmonella; Cell; MALDI imaging; Flow cytometry; Phosphatidylethanolamine; Plasmalogen; Mass cytometry; Phosphatidylcholine; Biochemistry; Phenotype; Cell biology; Computational biology; Mass spectrometry; Biology; Bacteria; Molecular biology; Immunology; Matrix-assisted laser desorption/ionization; Phospholipid; Chromatography; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002241249,0.0004444711,0.0002803002,0.0004870867,0.0001476662,0.0002706298,0.0002283287,0.0003530268,0.0007125424],"category_scores_gemma":[0.0000856426,0.0001949235,0.000307575,0.0001644005,0.0002208715,0.0002527481,0.0002428551,0.0004067214,0.0001660614],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003098835,"about_ca_system_score_gemma":0.0002758813,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00162854,"about_ca_topic_score_gemma":0.002242455,"domain_scores_codex":[0.9999213,0.000008377036,0.000003996824,0.00002256571,0.00002102886,0.00002267973],"domain_scores_gemma":[0.9999071,0.00001334763,0.00003145255,0.00001067511,0.00001876996,0.00001865291],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002111132,0.00001137908,0.0003358589,0.00001386499,0.000002575634,0.00001867408,0.000006911091,0.0005079125,0.9984738,0.0000575985,0.00001333596,0.0005368863],"study_design_scores_gemma":[0.000005330851,0.0002857448,0.008935345,0.00000810932,0.00002833442,0.0001656596,0.0000594002,0.03214302,0.9574633,0.0001376478,0.0007534256,0.00001474331],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9313363,0.0003648085,0.06590348,0.0001113178,0.00001796327,0.00007435343,0.0005452263,0.0003154969,0.001330956],"genre_scores_gemma":[0.9404008,0.0006638942,0.0564824,0.00006675438,0.000007378019,0.000117934,0.0006079777,0.0000685944,0.001584375],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00162854,"threshold_uncertainty_score":0.003238082,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02764427438743468,"score_gpt":0.2702731384236549,"score_spread":0.2426288640362202,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}