{"id":"W3213872671","doi":"10.1186/s12915-021-01158-2","title":"The transposable element-rich genome of the cereal pest <i>Sitophilus oryzae</i>","year":2021,"lang":"en","type":"article","venue":"Lirias","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":72,"is_retracted":false,"has_abstract":false,"ca_institutions":"McGill University","funders":"National Human Genome Research Institute; European Regional Development Fund; Institut National des Sciences Appliquées de Lyon; Ministerio de Economía y Competitividad; Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement; Ministerio de Ciencia, Innovación y Universidades; Agence Nationale de la Recherche; Région Auvergne-Rhône-Alpes","keywords":"Sitophilus; Biology; Endosymbiosis; Rice weevil; Genome; Curculionidae; Xanthomonas oryzae; Transposable element; PEST analysis; Host (biology); Insect; Botany; Genetics; Gene; Plastid; Chloroplast","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001792224,0.0000898542,0.0001192949,0.000001760489,0.0004437148,0.00008024235,0.0003621149,0.00005265687,0.0005206356],"category_scores_gemma":[0.00002418891,0.00002233797,0.0001144573,0.0002756566,0.00009109504,0.00005359936,0.00006223857,0.00007730048,0.00001714578],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009478892,"about_ca_system_score_gemma":0.00001749896,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001818041,"about_ca_topic_score_gemma":0.00153935,"domain_scores_codex":[0.9991184,0.0001018351,0.0002153967,0.0001587737,0.0001844291,0.000221173],"domain_scores_gemma":[0.9995739,0.0001304066,0.00008486665,0.00009375226,0.00008450009,0.00003258598],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001962212,0.00005277014,0.006497164,0.000004465632,0.00001760282,0.000001680117,0.0001281213,0.000002136338,0.9890327,0.001540386,0.0003971049,0.002306185],"study_design_scores_gemma":[0.0001812053,0.000151809,0.4638485,0.00002106021,0.00002990214,0.00001106407,0.0006243266,0.000003065437,0.2774419,0.0009269062,0.2565823,0.0001779706],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9887216,0.0002960928,7.564611e-8,0.006062905,0.0004732879,0.0001062741,0.00005483955,0.00001289039,0.004272015],"genre_scores_gemma":[0.9979448,0.0001271258,0.00000867617,0.0004943265,0.0003910879,0.000007290323,0.00001625938,6.334227e-7,0.001009776],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7115909,"threshold_uncertainty_score":0.5700595,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01071496197435345,"score_gpt":0.1873960339276585,"score_spread":0.1766810719533051,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}