{"id":"W3213872671","doi":"10.1186/s12915-021-01158-2","title":"The transposable element-rich genome of the cereal pest <i>Sitophilus oryzae</i>","year":2021,"lang":"en","type":"article","venue":"Lirias","topic":"Insect symbiosis and bacterial influences","field":"Agricultural and Biological Sciences","cited_by":72,"is_retracted":false,"has_abstract":false,"ca_institutions":"McGill University","funders":"National Human Genome Research Institute; European Regional Development Fund; Institut National des Sciences Appliquées de Lyon; Ministerio de Economía y Competitividad; Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement; Ministerio de Ciencia, Innovación y Universidades; Agence Nationale de la Recherche; Région Auvergne-Rhône-Alpes","keywords":"Sitophilus; Biology; Endosymbiosis; Rice weevil; Genome; Curculionidae; Xanthomonas oryzae; Transposable element; PEST analysis; Host (biology); Insect; Botany; Genetics; Gene; Plastid; Chloroplast","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000526568,0.000210989,0.0001940197,0.0002658278,0.0001412772,0.000132485,0.0001018356,0.0001554855,0.0009935778],"category_scores_gemma":[0.0001359613,0.0001021866,0.0002002497,0.0002369475,0.000109674,0.0001141679,0.0001362208,0.000356194,0.0002387495],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002184136,"about_ca_system_score_gemma":0.0002396428,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002340826,"about_ca_topic_score_gemma":0.004355677,"domain_scores_codex":[0.9999614,0.000004993377,0.000002275194,0.000013263,0.000008742782,0.000009448767],"domain_scores_gemma":[0.999903,0.00002401447,0.00003238426,0.000007200239,0.000008763523,0.00002456881],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001142386,0.000005998995,0.0005250496,0.00002361839,0.000005153005,0.0000422707,0.00002244507,0.00002361289,0.9981511,0.00003949215,0.00002980086,0.001017133],"study_design_scores_gemma":[0.00008043692,0.0007882051,0.3546965,0.00004567562,0.0001794206,0.002019726,0.0005600151,0.001901711,0.6275784,0.000297462,0.01181753,0.00003499715],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9948025,0.0003694345,0.001494511,0.00006333239,0.00001066558,0.0000133986,0.002500972,0.00007603309,0.0006692332],"genre_scores_gemma":[0.9820818,0.0002589662,0.003101419,0.00007605559,0.000007305533,0.00001869111,0.01218251,0.00004579224,0.002227506],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002340826,"threshold_uncertainty_score":0.004654467,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01071496197435345,"score_gpt":0.1873960339276585,"score_spread":0.1766810719533051,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}