{"id":"W3213936528","doi":"","title":"Molecular Docking and Dynamics of CePNKP Phosphatase Binding to the ss-5-Mer TCCTC","year":2021,"lang":"en","type":"article","venue":"Student Research Proceedings","topic":"Genetics, Aging, and Longevity in Model Organisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"MacEwan University","funders":"","keywords":"Molecular dynamics; Phosphatase; DNA ligase; DNA; MODELLER; Chemistry; Docking (animal); Biophysics; Crystallography; Enzyme; Stereochemistry; Biochemistry; Homology modeling; Biology; Computational chemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009816962,0.0001557248,0.0001648464,0.00008807989,0.0002710554,0.0001526839,0.0004601527,0.00009773304,0.00002011166],"category_scores_gemma":[0.0003032658,0.0001312579,0.00005971903,0.0003412879,0.0001872065,0.000007035263,0.001143845,0.0002560232,0.000009047981],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003848093,"about_ca_system_score_gemma":0.00009403014,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004395372,"about_ca_topic_score_gemma":0.00006344344,"domain_scores_codex":[0.9980637,0.00004457198,0.0002247385,0.0004991086,0.0006777679,0.0004901152],"domain_scores_gemma":[0.9988028,0.000020269,0.00005550387,0.0002741622,0.0006880615,0.0001591633],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004551387,0.0001757652,0.02561419,0.0001594544,0.0001490759,0.00002364325,0.003542867,0.0001561534,0.9601392,0.003830496,0.004425853,0.001737753],"study_design_scores_gemma":[0.0004828183,0.0003720106,0.004456247,0.00006613512,0.00003020178,0.00002887466,0.006238706,0.000295734,0.9736916,0.0003148232,0.01376922,0.0002536359],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9949062,0.001668455,0.0003777834,0.001543928,0.0001095128,0.0003779765,0.00002381335,0.000008153894,0.0009841362],"genre_scores_gemma":[0.9979257,0.0005587147,0.00045784,0.0002056979,0.0001229489,0.00003940173,0.00004307311,0.00003088107,0.0006157458],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02115794,"threshold_uncertainty_score":0.5352542,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03451538853300814,"score_gpt":0.3613751882090659,"score_spread":0.3268597996760578,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}