{"id":"W3213940119","doi":"10.1080/19490976.2021.1994832","title":"E.coli Nissle increases transcription of flagella assembly and formate hydrogenlyase genes in response to colitis","year":2021,"lang":"en","type":"article","venue":"Gut Microbes","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Downregulation and upregulation; Transcriptome; Transcriptional regulation; Gene; Microbiology; Escherichia coli; Population; Nitric oxide; Inflammation; Motility; Probiotic; Transcription (linguistics); Gene expression; Bacteria; Immunology; Cell biology; Genetics; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001149581,0.0002190839,0.000348576,0.0002578771,0.00009817417,0.0002763557,0.00007239531,0.0002369762,0.001290348],"category_scores_gemma":[0.0001810448,0.0001295195,0.0002042212,0.0001965061,0.0002490529,0.0001118001,0.0002253824,0.0004241855,0.0001785472],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001784439,"about_ca_system_score_gemma":0.0001633262,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005239177,"about_ca_topic_score_gemma":0.0009162356,"domain_scores_codex":[0.9998465,0.00002124006,0.00001113543,0.00003641108,0.00003626311,0.00004859709],"domain_scores_gemma":[0.9998492,0.00003671881,0.00003205831,0.00001084688,0.00002013265,0.00005096507],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002716339,0.00001874172,0.0005632768,0.00002279686,0.000002618664,0.00002460097,0.00001554102,0.00001736003,0.9985322,0.000007064259,0.00001599604,0.0005082141],"study_design_scores_gemma":[0.00003136442,0.0009628063,0.1336533,0.00002638259,0.00003486264,0.0002012058,0.0002900433,0.0008085771,0.8625181,0.0000837593,0.001376026,0.00001354988],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977586,0.0005608596,0.0004760293,0.0001019598,0.00002350316,0.00001048931,0.0004769527,0.0000335182,0.0005579105],"genre_scores_gemma":[0.9953883,0.0004255282,0.0008402293,0.0001538036,0.00001040091,0.00002789536,0.0007405972,0.00001602345,0.002397282],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001290348,"threshold_uncertainty_score":0.004316628,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008180391419194714,"score_gpt":0.2499039708015712,"score_spread":0.2417235793823765,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}