{"id":"W3214080718","doi":"10.1101/gr.275752.121","title":"Transcriptional activity and epigenetic regulation of transposable elements in the symbiotic fungus <i>Rhizophagus irregularis</i>","year":2021,"lang":"en","type":"article","venue":"Genome Research","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":65,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Royal Society; Gatsby Charitable Foundation; University of Cambridge; Cancer Research UK; Wellcome Trust; Natural Sciences and Engineering Research Council of Canada; Bill and Melinda Gates Foundation","keywords":"Biology; Rhizophagus irregularis; Transposable element; Genome; DNA methylation; Genetics; Epigenetics; Gene; Epigenomics; Gene expression; Symbiosis; Arbuscular mycorrhizal","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008894443,0.0001152322,0.000111626,0.0001610899,0.00008105261,0.000191998,0.0001029784,0.0001453723,0.0003854489],"category_scores_gemma":[0.0001515947,0.0000791366,0.0001216141,0.000104798,0.0001818887,0.00009230812,0.0001349461,0.0001751898,0.0001537136],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001304665,"about_ca_system_score_gemma":0.00006098326,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005475714,"about_ca_topic_score_gemma":0.0009720339,"domain_scores_codex":[0.9999106,0.00001143103,0.000005275022,0.00004247933,0.00001662019,0.0000136744],"domain_scores_gemma":[0.9998912,0.00002371916,0.00004425587,0.00001281128,0.00001072716,0.00001738481],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004520252,0.000005097656,0.001475945,0.000008722686,0.000002310224,0.00001905946,0.00002846233,0.0000349754,0.9975042,0.00004338258,0.000006637591,0.0008261577],"study_design_scores_gemma":[0.00001595109,0.0002466969,0.4162644,0.00001328979,0.00003317443,0.0004082712,0.0002122866,0.002894228,0.5779774,0.0002431676,0.001674853,0.00001632802],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985836,0.0002678538,0.0005240393,0.00002180207,0.000002212517,0.000002972254,0.0001346752,0.00001424882,0.0004485668],"genre_scores_gemma":[0.9989253,0.00007635854,0.0003284815,0.00001441186,0.000002005716,0.000003808,0.0001740849,0.000005429697,0.0004701494],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0005475714,"threshold_uncertainty_score":0.001289487,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04360162279266417,"score_gpt":0.2801181328697172,"score_spread":0.236516510077053,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}