{"id":"W3214080718","doi":"10.1101/gr.275752.121","title":"Transcriptional activity and epigenetic regulation of transposable elements in the symbiotic fungus <i>Rhizophagus irregularis</i>","year":2021,"lang":"en","type":"article","venue":"Genome Research","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":65,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Royal Society; Gatsby Charitable Foundation; University of Cambridge; Cancer Research UK; Wellcome Trust; Natural Sciences and Engineering Research Council of Canada; Bill and Melinda Gates Foundation","keywords":"Biology; Rhizophagus irregularis; Transposable element; Genome; DNA methylation; Genetics; Epigenetics; Gene; Epigenomics; Gene expression; Symbiosis; Arbuscular mycorrhizal","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0008171111,0.00006269965,0.0001022634,0.00002650299,0.0001669036,0.00004248734,0.0001405457,0.00005641521,0.002468494],"category_scores_gemma":[0.00005017638,0.00002640404,0.00004300187,0.0005412929,0.00002219587,0.00007160466,0.00001850885,0.0002086928,0.00002974235],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001939792,"about_ca_system_score_gemma":0.00002307621,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003422815,"about_ca_topic_score_gemma":0.0007979965,"domain_scores_codex":[0.9986215,0.0004062761,0.0001573225,0.0001990281,0.00037273,0.0002431516],"domain_scores_gemma":[0.9988059,0.0009624587,0.00002292279,0.00006340113,0.0001017581,0.00004353667],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00006550569,0.0001302297,0.01873844,0.00002321892,0.000008483335,0.000007900612,0.0001915102,0.00001200462,0.9730693,0.001068421,0.00007745083,0.006607521],"study_design_scores_gemma":[0.0001461543,0.0002538047,0.9397897,0.00004873269,0.00001244208,0.00005119105,0.0006657723,0.0003386341,0.04317359,0.004705384,0.01069022,0.0001243485],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9943135,0.002516066,0.000006617588,0.001164814,0.00004028223,0.0002130148,0.0003611743,0.000004537461,0.001379997],"genre_scores_gemma":[0.9981546,0.001026472,0.0000464985,0.00002446362,0.00005883509,0.00001366704,0.0003131824,6.307811e-7,0.0003616569],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9298958,"threshold_uncertainty_score":0.9984434,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04360162279266417,"score_gpt":0.2801181328697172,"score_spread":0.236516510077053,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}