{"id":"W3214220292","doi":"10.1371/journal.pone.0255262","title":"Genomic diversity of bacteriophages infecting Rhodobacter capsulatus and their relatedness to its gene transfer agent RcGTA","year":2021,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Indiana University Bloomington; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Illinois Wesleyan University","keywords":"Rhodobacter; Biology; Horizontal gene transfer; Bacteriophage; Siphoviridae; Genome; Genetics; Actinobacteria; Gene; Microbiology; Escherichia coli; Mutant","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002510781,0.0002828996,0.000311808,0.001188191,0.0002216688,0.0005641462,0.0002174942,0.0003383442,0.0003599826],"category_scores_gemma":[0.0007183994,0.0001919864,0.0004220238,0.0009454348,0.0002574172,0.000228664,0.0003635757,0.0003717655,0.0001974714],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002083999,"about_ca_system_score_gemma":0.0002472673,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002324513,"about_ca_topic_score_gemma":0.001750918,"domain_scores_codex":[0.9996501,0.00003669197,0.00004874976,0.0001226904,0.00007156327,0.00007012345],"domain_scores_gemma":[0.9991549,0.0001891398,0.0002816349,0.00007561879,0.0001412845,0.0001573131],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003427255,0.00006449146,0.05341289,0.0001326773,0.0000585324,0.0002597448,0.000711087,0.0002420346,0.9384314,0.00008054809,0.0000451967,0.006218584],"study_design_scores_gemma":[0.00001824073,0.0006020187,0.9254684,0.00003807427,0.0001430149,0.001929773,0.0009512951,0.0006276731,0.06753489,0.0000971293,0.002550915,0.00003846735],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983479,0.000363112,0.0003137095,0.00002221795,0.00000302615,0.00001444874,0.0006094628,0.00001143009,0.0003148406],"genre_scores_gemma":[0.9957427,0.0003458033,0.001089116,0.00003781514,0.00000777381,0.0000224425,0.002323828,0.000008618135,0.0004219262],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002324513,"threshold_uncertainty_score":0.004621983,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03491296904427007,"score_gpt":0.2031631127867377,"score_spread":0.1682501437424677,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}