{"id":"W3214524297","doi":"10.1371/journal.pcbi.1009160","title":"MGEnrichment: A web application for microglia gene list enrichment analysis","year":2021,"lang":"en","type":"article","venue":"PLoS Computational Biology","topic":"Neuroinflammation and Neurodegeneration Mechanisms","field":"Neuroscience","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Sick Kids Foundation; Canadian Institutes of Health Research; Hospital for Sick Children; Canada Foundation for Innovation; Brain and Behavior Research Foundation","keywords":"Upload; Autism; Computational biology; Microglia; Autism spectrum disorder; Computer science; Gene expression; Regulation of gene expression; Gene; Bioinformatics; Biology; World Wide Web; Genetics; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001717663,0.002834789,0.001742087,0.003558954,0.001105108,0.00238805,0.002444003,0.001231483,0.08201934],"category_scores_gemma":[0.004996246,0.001275599,0.002409088,0.002661814,0.0005433096,0.0017601,0.003895087,0.001718548,0.03394503],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001005913,"about_ca_system_score_gemma":0.001609933,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005239739,"about_ca_topic_score_gemma":0.01081357,"domain_scores_codex":[0.9991248,0.0001184605,0.00007963103,0.0002828636,0.0002951637,0.00009906943],"domain_scores_gemma":[0.998785,0.0006803003,0.0001086805,0.0001916298,0.000144656,0.00008978974],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002023892,0.0002767162,0.008556845,0.003589748,0.001403923,0.001006576,0.0008811047,0.005246816,0.01860471,0.004850416,0.7901729,0.1633863],"study_design_scores_gemma":[0.001509247,0.0003343834,0.02802096,0.0007382319,0.0005584101,0.001443856,0.0004926627,0.09282193,0.03556652,0.04608637,0.7918816,0.0005458294],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.01041073,0.001756415,0.1312745,0.0006741362,0.0004857313,0.0005680781,0.1718984,0.6736302,0.009301873],"genre_scores_gemma":[0.06091924,0.001977686,0.4102915,0.00240015,0.000292875,0.004300394,0.3451618,0.1489374,0.02571901],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.08201934,"threshold_uncertainty_score":0.2743821,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03353754300023847,"score_gpt":0.2876227771790263,"score_spread":0.2540852341787879,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}