{"id":"W3215243922","doi":"10.1016/j.scitotenv.2021.151961","title":"Aerobic naphthenic acid-degrading bacteria in petroleum-coke improve oil sands process water remediation in biofilters: DNA-stable isotope probing reveals methylotrophy in Schmutzdecke","year":2021,"lang":"en","type":"article","venue":"The Science of The Total Environment","topic":"Petroleum Processing and Analysis","field":"Chemistry","cited_by":27,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Alberta","funders":"Canada First Research Excellence Fund; Alberta Innovates; Natural Sciences and Engineering Research Council of Canada; Canada's Oil Sands Innovation Alliance; Imperial Oil Limited; Syncrude; Alberta Environment and Parks; Suncor Energy Incorporated; Canadian Natural Resources Limited","keywords":"Naphthenic acid; Oil sands; Chemistry; Biofilter; Environmental chemistry; AlkB; Methanobacterium; Environmental remediation; Biodegradation; Coke; Pulp and paper industry; Organic chemistry; Biochemistry; Archaea; Biology; DNA; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007029729,0.000232581,0.0002008664,0.0002352841,0.000253467,0.0004536605,0.0001888886,0.0002143436,0.0006249674],"category_scores_gemma":[0.0001256725,0.0001322048,0.00015678,0.0001302011,0.0001602457,0.0002335891,0.0002143818,0.0002356985,0.000167523],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002214449,"about_ca_system_score_gemma":0.000243709,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009282728,"about_ca_topic_score_gemma":0.01394128,"domain_scores_codex":[0.9998916,0.000006361151,0.000007081489,0.00003279786,0.00003529037,0.00002682157],"domain_scores_gemma":[0.9999473,0.00001022883,0.00000898551,0.000003804233,0.00001736599,0.00001237006],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009778731,0.00002031311,0.001984429,0.000009359088,0.0000042171,0.00002441835,0.00004464098,0.00007621641,0.9964263,0.0000212845,0.00001201555,0.001279065],"study_design_scores_gemma":[0.000008054353,0.0002324896,0.03796332,0.000004923771,0.00001867706,0.00007156251,0.000296439,0.002333957,0.9584292,0.00004420146,0.0005895383,0.000007762345],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9993715,0.0000455362,0.0002520785,0.00001797299,0.000003908609,0.000003122033,0.00008645241,0.000008414903,0.0002109993],"genre_scores_gemma":[0.9977896,0.00009181632,0.000554909,0.0000112512,0.000001918252,0.000005515171,0.0001453907,0.000004622112,0.00139485],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009282728,"threshold_uncertainty_score":0.01845741,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00876993953305857,"score_gpt":0.2156325717931987,"score_spread":0.2068626322601401,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}