{"id":"W3215741303","doi":"10.1101/2021.11.24.469925","title":"Evolutionary features of a prolific subtype of avian influenza A virus in European waterfowl","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Centers for Disease Control and Prevention; National Institutes of Health; U.S. Department of Health and Human Services; Naturvårdsverket; Vetenskapsrådet; National Institute of Allergy and Infectious Diseases; Natural Sciences and Engineering Research Council of Canada; European Commission; Svenska Forskningsrådet Formas","keywords":"Waterfowl; Biology; Anas; Reassortment; Lineage (genetic); Phylogenetic tree; Hemagglutinin (influenza); Population; Evolutionary biology; Influenza A virus subtype H5N1; Zoology; Phylogenetics; Anseriformes; Genetics; Virus; Gene; Ecology","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002831746,0.0001891755,0.0001520877,0.0009489747,0.0004132775,0.0004297956,0.0001905517,0.0003658335,0.0005066024],"category_scores_gemma":[0.0004351151,0.0001061521,0.0002241662,0.0004873029,0.0002741241,0.0002860266,0.000257564,0.0001825878,0.000114732],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003159727,"about_ca_system_score_gemma":0.0001203651,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00465774,"about_ca_topic_score_gemma":0.007440421,"domain_scores_codex":[0.9998488,0.00002438453,0.00001434495,0.00005799481,0.00001882363,0.00003563867],"domain_scores_gemma":[0.999581,0.00006114792,0.0001788449,0.00001928186,0.00007528204,0.00008439934],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001706121,0.00003021366,0.9644475,0.00001457395,0.00004088605,0.0003065247,0.0004435709,0.0001454519,0.03170721,0.00002019857,0.00003556459,0.002637761],"study_design_scores_gemma":[9.744055e-7,0.00004705325,0.9989793,0.000002685885,0.000005758692,0.0001760499,0.0002413069,0.0001338312,0.0003150496,0.000004966533,0.00009110488,0.000001959104],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9998336,0.0000297785,0.00003151445,0.000002256815,5.319959e-7,8.311239e-7,0.00003983143,5.209798e-7,0.00006113294],"genre_scores_gemma":[0.9996275,0.00002339109,0.00009282093,0.00000439914,0.000001491331,0.000002390631,0.0001695793,7.964883e-7,0.00007759008],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00465774,"threshold_uncertainty_score":0.00926125,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03741331418214076,"score_gpt":0.290877336607291,"score_spread":0.2534640224251502,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}