{"id":"W3215777512","doi":"10.1111/ajt.16895","title":"Transcripts associated with chronic lung allograft dysfunction in transbronchial biopsies of lung transplants","year":2021,"lang":"en","type":"article","venue":"American Journal of Transplantation","topic":"Transplantation: Methods and Outcomes","field":"Medicine","cited_by":30,"is_retracted":false,"has_abstract":false,"ca_institutions":"University Health Network; University of Alberta","funders":"Genome Canada","keywords":"Medicine; Lung; Pathology; Parenchyma; Gene expression; Inflammation; Gene expression profiling; Gene; Histology; Angiogenesis; Fibrosis; Lung transplantation; Cancer research; Immunology; Internal medicine; Biology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000450181,0.000248169,0.0009012218,0.0003992133,0.00004738476,0.00001375239,0.00009422371,0.00009270986,0.00005514873],"category_scores_gemma":[0.00002131342,0.0001985211,0.0002872985,0.000797924,0.0002043427,0.0002853143,8.385441e-7,0.0003828112,3.09243e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001410498,"about_ca_system_score_gemma":0.0004918699,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001269556,"about_ca_topic_score_gemma":0.001051462,"domain_scores_codex":[0.99765,0.0003111892,0.0009293857,0.0002266965,0.0005835065,0.0002992715],"domain_scores_gemma":[0.9986731,0.0003098792,0.0004715934,0.0001252223,0.0002852893,0.0001348997],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.008606147,0.000717765,0.792024,0.001263139,0.001377715,0.001864701,0.008749734,0.001726289,0.1688253,0.00008727332,0.000009093144,0.01474879],"study_design_scores_gemma":[0.01023977,0.00150867,0.9496062,0.001914189,0.00197166,0.001368382,0.0005257688,0.0003700688,0.03224442,0.00001542961,0.00001568039,0.000219761],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9411483,0.0006085574,0.05697127,0.0006232819,0.0002057687,0.0002176219,0.000105184,0.00001709996,0.0001028816],"genre_scores_gemma":[0.9929316,0.002201891,0.004455449,0.0001178816,0.00006076299,0.000006103194,0.0001677388,0.0000326857,0.00002585871],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1575822,"threshold_uncertainty_score":0.8095456,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01049917589501259,"score_gpt":0.2792320354751363,"score_spread":0.2687328595801237,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}