{"id":"W3216032021","doi":"10.1101/2021.11.17.469027","title":"Monophyly of Diverse Bigyromonadea and their Impact on Phylogenomic Relationships Within Stramenopiles","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Monophyly; Tree (set theory); Biology; Evolutionary biology; Bayesian probability; Phylogenetic tree; Computational biology; Gene; Genetics; Computer science; Mathematics; Artificial intelligence; Combinatorics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000421877,0.0004772796,0.0004634503,0.002196277,0.0008174286,0.001131901,0.0002336996,0.0003813932,0.001957727],"category_scores_gemma":[0.000703786,0.0002088638,0.0004788136,0.001155098,0.0004745764,0.000670232,0.001133073,0.0006999957,0.000451704],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000300867,"about_ca_system_score_gemma":0.000303067,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001203733,"about_ca_topic_score_gemma":0.002379825,"domain_scores_codex":[0.9997634,0.00004034781,0.00001686364,0.00008697648,0.0000370863,0.00005534454],"domain_scores_gemma":[0.9994662,0.0001786474,0.0001257792,0.00005127275,0.00007771759,0.0001003067],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001157818,0.0001084524,0.3720548,0.0006637364,0.0003679193,0.0008236888,0.004174259,0.001690113,0.5864934,0.001302339,0.0003604623,0.03080304],"study_design_scores_gemma":[0.00001967474,0.0002018912,0.9822389,0.0001322701,0.0001260352,0.0006709004,0.0026862,0.003184471,0.005024919,0.0007339838,0.004936278,0.00004449179],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978629,0.000396722,0.0006260317,0.00003818217,0.000003760371,0.000008183289,0.0005080446,0.00002128775,0.0005348641],"genre_scores_gemma":[0.9964272,0.0002377219,0.001571958,0.00003198579,0.000003443325,0.0000172693,0.001435497,0.00001896697,0.0002558886],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002196277,"threshold_uncertainty_score":0.00654918,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01913280187094269,"score_gpt":0.2156165396368058,"score_spread":0.1964837377658631,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}