{"id":"W3216054981","doi":"10.1101/2021.11.23.469778","title":"Genome assembly of the JD17 soybean provides a new reference genome for Comparative genomics","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Soybean genetics and cultivation","field":"Agricultural and Biological Sciences","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"National Key Research and Development Program of China; National Natural Science Foundation of China","keywords":"Biology; Comparative genomics; Genome; Genetics; Genomics; Reference genome; Indel; Gene; Sequence assembly; Computational biology; Single-nucleotide polymorphism; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000437831,0.00077933,0.0005747862,0.0009233733,0.0005319235,0.0005367576,0.0004263507,0.0003308513,0.001968064],"category_scores_gemma":[0.000558448,0.0004381569,0.000881426,0.001334231,0.0001511681,0.0002927411,0.0004934698,0.0006624262,0.001043244],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006718305,"about_ca_system_score_gemma":0.0008056555,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004863684,"about_ca_topic_score_gemma":0.006845885,"domain_scores_codex":[0.999813,0.00001835096,0.00002152059,0.00007877134,0.00004559635,0.00002270621],"domain_scores_gemma":[0.9997413,0.0000309504,0.00005843597,0.00004777991,0.00007860172,0.00004300886],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000405902,0.00004029817,0.008206304,0.0003509427,0.00007288939,0.0003104375,0.0001507434,0.001239291,0.9709985,0.0004581552,0.001388534,0.01637791],"study_design_scores_gemma":[0.0003466273,0.0008188773,0.2318854,0.0002723604,0.00077386,0.002288129,0.0006017782,0.04185472,0.570917,0.001553396,0.1485326,0.0001552988],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.838706,0.002918074,0.100278,0.0002731755,0.0002836318,0.0002584327,0.04969439,0.002832714,0.004755538],"genre_scores_gemma":[0.5623514,0.001583772,0.2105171,0.0001257373,0.00004609697,0.0002764703,0.2185174,0.001702525,0.004879548],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004863684,"threshold_uncertainty_score":0.009670734,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04977152337242531,"score_gpt":0.2349810631476064,"score_spread":0.1852095397751811,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}