{"id":"W3216102782","doi":"10.1099/mgen.0.000687","title":"Complete genome for Actinobacillus pleuropneumoniae serovar 8 reference strain 405: comparative analysis with draft genomes for different laboratory stock cultures indicates little genetic variation","year":2021,"lang":"en","type":"article","venue":"Microbial Genomics","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; National Natural Science Foundation of China; Wellcome Trust; Royal Veterinary College; Zoetis; London School of Hygiene and Tropical Medicine; Imperial College London; Pfizer","keywords":"Biology; Whole genome sequencing; Genome; Genetics; Reference genome; Actinobacillus pleuropneumoniae; DNA sequencing; Computational biology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005471365,0.0007724215,0.0005250471,0.001188613,0.0003836374,0.0007238853,0.0005492414,0.0005299081,0.002518728],"category_scores_gemma":[0.001301009,0.0002351468,0.0004923381,0.001849319,0.0002026796,0.0004772311,0.0004726688,0.0006254805,0.001655905],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005306261,"about_ca_system_score_gemma":0.000819262,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003621646,"about_ca_topic_score_gemma":0.003875121,"domain_scores_codex":[0.9995833,0.00003351647,0.00003928343,0.0001166774,0.0001776774,0.00004946785],"domain_scores_gemma":[0.999488,0.00008327699,0.0001177577,0.00008070213,0.0001762216,0.00005411098],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001187767,0.0001129591,0.01108104,0.0008697664,0.00009473852,0.0003571278,0.0004002454,0.0008038568,0.9481953,0.0004193795,0.002796366,0.03368145],"study_design_scores_gemma":[0.000220875,0.001822937,0.2987534,0.0005405612,0.0008445596,0.002388252,0.001494938,0.004913005,0.4989332,0.001014591,0.1889091,0.0001645508],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.872376,0.00229214,0.02127784,0.0003095674,0.0001548377,0.0001604771,0.0969719,0.0007622351,0.005694991],"genre_scores_gemma":[0.4955753,0.00228408,0.04722014,0.0002085371,0.00004783933,0.0003186963,0.4492543,0.0005880506,0.004502918],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003621646,"threshold_uncertainty_score":0.008426011,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03569766944689609,"score_gpt":0.2886834388108179,"score_spread":0.2529857693639218,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}