{"id":"W3216525517","doi":"10.1093/ve/veab092","title":"CoVizu: Rapid analysis and visualization of the global diversity of SARS-CoV-2 genomes","year":2021,"lang":"en","type":"article","venue":"Virus Evolution","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"","keywords":"Genome; Indel; Phylogenetic tree; Lineage (genetic); Biology; Computational biology; Bacterial genome size; Comparative genomics; Genomics; 1000 Genomes Project; Python (programming language); Phylogenetics; Synteny; Evolutionary biology; Coalescent theory; Genetics; Computer science; Gene; Single-nucleotide polymorphism","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001496818,0.001667349,0.0009829388,0.002867475,0.0007621254,0.001810874,0.001516944,0.0008619271,0.02811628],"category_scores_gemma":[0.002170134,0.0008047194,0.001535863,0.001378673,0.0003510172,0.002026907,0.003082361,0.002132369,0.007271409],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004487656,"about_ca_system_score_gemma":0.0008714404,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00266675,"about_ca_topic_score_gemma":0.003613736,"domain_scores_codex":[0.9995757,0.00006657179,0.00002822644,0.0001148088,0.0001324144,0.00008226738],"domain_scores_gemma":[0.9994407,0.0002014244,0.00005976298,0.00007575282,0.0001117664,0.0001104773],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.003896635,0.0003776923,0.01910536,0.002984487,0.0007382666,0.001921989,0.003308599,0.009736592,0.1998842,0.009669357,0.5848272,0.1635496],"study_design_scores_gemma":[0.001640872,0.0006466761,0.06309494,0.001224353,0.0003578553,0.002881842,0.001655739,0.3233052,0.1109394,0.02726987,0.4660805,0.0009027763],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.1143874,0.001521567,0.2347842,0.001913771,0.0009208886,0.0007161475,0.1588183,0.4698999,0.01703796],"genre_scores_gemma":[0.2522199,0.001715986,0.5310044,0.001117737,0.0003097092,0.001372413,0.1398389,0.06368896,0.00873198],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.02811628,"threshold_uncertainty_score":0.09405833,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01703483866833012,"score_gpt":0.2604323085630957,"score_spread":0.2433974698947656,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}