{"id":"W3216596072","doi":"10.5423/ppj.oa.10.2021.0151","title":"Whole-Genome Characterization of Alfalfa Mosaic Virus Obtained from Metagenomic Analysis of Vinca minor and Wisteria sinensis in Iran: with Implications for the Genetic Structure of the Virus","year":2021,"lang":"en","type":"article","venue":"The Plant Pathology Journal","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Sari Agricultural Sciences and Natural Resources University","keywords":"Genetic diversity; Alfalfa mosaic virus; Gene; Genetic variation; Population; Genome; Genetic analysis; Virus; Nucleotide diversity","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002081832,0.00009946691,0.0003465264,0.0000346945,0.0002183194,0.00001849008,0.0003101282,0.00005086418,0.00003405255],"category_scores_gemma":[0.00007170085,0.00002732934,0.00009146617,0.0004601392,0.0002448102,0.00003149688,0.0001019129,0.0001258433,1.149377e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001251479,"about_ca_system_score_gemma":0.00002080786,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001396367,"about_ca_topic_score_gemma":0.00545773,"domain_scores_codex":[0.9989738,0.0002822113,0.0003285829,0.0001444296,0.0001167512,0.0001542266],"domain_scores_gemma":[0.9988102,0.0005758106,0.0003669274,0.0001167998,0.000105699,0.00002458737],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001335249,0.00002654602,0.01575969,0.000004097159,0.0003966924,0.000004103123,0.0004006868,0.0001023917,0.9824108,0.000008618773,0.000005762134,0.0007471134],"study_design_scores_gemma":[0.0001585232,0.0000731426,0.9609388,0.000009664071,0.0004922623,0.00009562647,0.0002040342,0.0001731492,0.03744848,0.0001548005,0.000202044,0.00004943587],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9665542,0.0007555284,0.00005073936,0.001816418,0.00002432614,0.0001942374,0.03060186,0.000001583715,0.00000112671],"genre_scores_gemma":[0.9985017,0.000808953,0.0001003836,0.00007333388,0.00003597635,0.000006202759,0.0004612597,0.000001051404,0.0000111432],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9451792,"threshold_uncertainty_score":0.3045541,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03200786451742741,"score_gpt":0.2352872048847512,"score_spread":0.2032793403673238,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}