{"id":"W3216596072","doi":"10.5423/ppj.oa.10.2021.0151","title":"Whole-Genome Characterization of Alfalfa Mosaic Virus Obtained from Metagenomic Analysis of Vinca minor and Wisteria sinensis in Iran: with Implications for the Genetic Structure of the Virus","year":2021,"lang":"en","type":"article","venue":"The Plant Pathology Journal","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Sari Agricultural Sciences and Natural Resources University","keywords":"Genetic diversity; Alfalfa mosaic virus; Gene; Genetic variation; Population; Genome; Genetic analysis; Virus; Nucleotide diversity","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001332373,0.0003176414,0.0003185892,0.0009570824,0.0002833804,0.0003032482,0.0001975812,0.0002013126,0.0003514383],"category_scores_gemma":[0.0001596263,0.0001251591,0.0006852794,0.000765977,0.0001049888,0.0001278695,0.0002189181,0.0003069119,0.0002174117],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002222453,"about_ca_system_score_gemma":0.0002442172,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002561534,"about_ca_topic_score_gemma":0.003749601,"domain_scores_codex":[0.9999074,0.000005635477,0.00000692483,0.00003580906,0.00002774008,0.00001647879],"domain_scores_gemma":[0.9998983,0.00001462415,0.00003147754,0.000009545131,0.00002429294,0.00002168073],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00009768343,0.00001801705,0.005731434,0.00004216268,0.00002509445,0.0000739463,0.0001124873,0.0000612501,0.990886,0.00001989554,0.00002198878,0.002910161],"study_design_scores_gemma":[0.00002947446,0.0004338073,0.8610946,0.00002549537,0.0002775504,0.001283725,0.0008081635,0.001938289,0.1261528,0.000107762,0.007821561,0.00002680424],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961677,0.0003819334,0.001068755,0.00001882646,0.000007186723,0.00002655589,0.001923066,0.00001994685,0.000386],"genre_scores_gemma":[0.9746248,0.0005520102,0.004500414,0.00006131348,0.0000124064,0.00005136292,0.01894684,0.00004476614,0.001206104],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002561534,"threshold_uncertainty_score":0.005093217,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03200786451742741,"score_gpt":0.2352872048847512,"score_spread":0.2032793403673238,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}