{"id":"W3216748095","doi":"10.1186/s12879-021-06832-y","title":"A Metabolomics approach for the diagnosis Of SecondAry InfeCtions in COVID-19 (MOSAIC): a study protocol","year":2021,"lang":"en","type":"article","venue":"BMC Infectious Diseases","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"Chief Scientist Office","keywords":"Medical microbiology; Coronavirus disease 2019 (COVID-19); Parasitology; Protocol (science); Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); 2019-20 coronavirus outbreak; Mosaic; Medicine; Tropical medicine; Virology; Metabolomics; Biology; Bioinformatics; Pathology; Infectious disease (medical specialty); Outbreak; Geography; Alternative medicine; Disease","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0149591,0.002321739,0.002327828,0.001612949,0.002802365,0.002020726,0.002260509,0.002784371,0.03167747],"category_scores_gemma":[0.01052586,0.001373964,0.002518238,0.001455714,0.001448818,0.001351831,0.002573595,0.00229648,0.008441303],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002459354,"about_ca_system_score_gemma":0.01584092,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002279883,"about_ca_topic_score_gemma":0.003678109,"domain_scores_codex":[0.9953122,0.002293232,0.0007552697,0.0006824868,0.0005113804,0.0004453727],"domain_scores_gemma":[0.9930863,0.001071419,0.001007936,0.001003657,0.002716489,0.001114213],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.3181007,0.03335698,0.06027958,0.05642078,0.002015087,0.005634451,0.004756056,0.005963346,0.04602961,0.01961208,0.08777496,0.3600564],"study_design_scores_gemma":[0.1124999,0.09846713,0.1577595,0.02130864,0.00223512,0.002562279,0.003032397,0.006334672,0.01629063,0.009230114,0.5695003,0.0007793173],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"protocol","genre_gemma":"protocol","genre_scores_codex":[0.01031933,0.0006024928,0.008379472,0.0003926228,0.0001960062,0.9728956,0.00424072,0.0001023042,0.002871571],"genre_scores_gemma":[0.005508271,0.0005204332,0.01156877,0.0002630477,0.00005914158,0.9794902,0.001581927,0.00001335191,0.0009948222],"genre_candidate":"protocol","genre_consensus":"protocol","teacher_disagreement_score":0.03167747,"threshold_uncertainty_score":0.1059716,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02498229182628433,"score_gpt":0.3201399427582352,"score_spread":0.2951576509319509,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}