{"id":"W3216852004","doi":"10.3390/genes12111830","title":"Genomewide Association Analyses of Lactation Persistency and Milk Production Traits in Holstein Cattle Based on Imputed Whole-Genome Sequence Data","year":2021,"lang":"en","type":"article","venue":"Genes","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":137,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"","keywords":"Biology; Holstein Cattle; Genome-wide association study; Genetics; Whole genome sequencing; Lactation; Milk production; Dairy cattle; Genome; Sequence (biology); Gene; Single-nucleotide polymorphism; Animal science; Genotype; Pregnancy","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001726776,0.0003257965,0.0004269911,0.001162995,0.0004565321,0.0005651569,0.0004255885,0.000344667,0.001147484],"category_scores_gemma":[0.001808812,0.0001640105,0.0008061923,0.001849611,0.0003069868,0.0001902137,0.0003905554,0.0005935639,0.0001152832],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000225691,"about_ca_system_score_gemma":0.0002784145,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006813963,"about_ca_topic_score_gemma":0.01329715,"domain_scores_codex":[0.999207,0.0002914944,0.00006352229,0.0002423743,0.00009785804,0.00009783648],"domain_scores_gemma":[0.998767,0.0006620044,0.0002858721,0.0001224889,0.00006864037,0.00009393165],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00107714,0.00005993626,0.9747916,0.00005495824,0.002114972,0.000558855,0.0001769042,0.001526496,0.009055001,0.0001196964,0.0002906523,0.01017386],"study_design_scores_gemma":[0.00003218673,0.00006534784,0.9959531,0.000009258584,0.0004168901,0.0002339393,0.0000758281,0.002290859,0.0003285333,0.0001114198,0.0004749382,0.000007630203],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974495,0.0005463107,0.0009828795,0.00004498652,0.00000513188,0.000002937868,0.0008459552,0.00001701501,0.0001052828],"genre_scores_gemma":[0.9962322,0.0001761229,0.0008844525,0.00003715972,0.00001070804,0.000008763102,0.002451793,0.000009081186,0.0001897919],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006813963,"threshold_uncertainty_score":0.01354861,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05620678314083162,"score_gpt":0.3018705274699747,"score_spread":0.2456637443291431,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}