{"id":"W3216911179","doi":"10.1128/msystems.00682-21","title":"Weaning Age and Its Effect on the Development of the Swine Gut Microbiome and Resistome","year":2021,"lang":"en","type":"article","venue":"mSystems","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":71,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Alberta Agriculture and Forestry","keywords":"Faecalibacterium prausnitzii; Biology; Weaning; Prevotella; Microbiome; Resistome; Feces; Metagenomics; Bacteroides; Bifidobacterium; Microbiology; Physiology; Veterinary medicine; Animal science; Antibiotics; Antibiotic resistance; Lactobacillus; Bacteria; Gene; Bioinformatics; Genetics; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002985258,0.00008306385,0.0001157819,0.00001224174,0.0001354777,0.00001526249,0.00007591004,0.00006235384,0.000002906739],"category_scores_gemma":[0.00003644052,0.00004697249,0.00002587104,0.00005580798,0.00002918169,6.593616e-7,0.0001147713,0.00005403525,0.000002552719],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009594477,"about_ca_system_score_gemma":0.00005872187,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005233067,"about_ca_topic_score_gemma":0.00006440281,"domain_scores_codex":[0.9993928,0.0001216465,0.0001500176,0.0001708055,0.00004836887,0.0001163705],"domain_scores_gemma":[0.9996809,0.00002428154,0.00005842329,0.0001843107,0.00002528265,0.00002673603],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001189927,0.000008073941,0.0007154235,0.0001718203,0.00002234856,0.000002038325,0.000199114,2.52188e-7,0.9982037,0.00005890359,0.000448811,0.0001576472],"study_design_scores_gemma":[0.0003372353,0.00009580651,0.03607219,0.0001969998,0.00001068088,0.00004138648,0.0001013116,0.000002247666,0.9091515,0.000001970414,0.05389667,0.0000920087],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966486,0.002236726,0.000004357672,0.0002796613,0.0001150013,0.0001767109,0.000007332711,0.000002597355,0.0005290234],"genre_scores_gemma":[0.9983999,0.00002685242,0.00003865598,0.0001467178,0.00004896633,0.00000676435,0.00001102746,0.000008210014,0.001312968],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08905219,"threshold_uncertainty_score":0.1915483,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01160755060804786,"score_gpt":0.2388924752288165,"score_spread":0.2272849246207687,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}