{"id":"W3216951937","doi":"10.1101/2021.11.24.469913","title":"Synchrony and idiosyncrasy in the gut microbiome of wild baboons","year":2021,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Institute for Advanced Research; Centre Hospitalier Universitaire Sainte-Justine; Montreal Heart Institute","funders":"","keywords":"Microbiome; Biology; Metagenomics; Host (biology); Biological dispersal; Holobiont; Ecology; Gut flora; Evolutionary biology; Genetics; Population; Immunology; Symbiosis; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009168006,0.0001789909,0.0003484582,0.0006862889,0.0004099503,0.0006762674,0.0001612429,0.000276776,0.001493669],"category_scores_gemma":[0.001826014,0.0002269763,0.000186704,0.0004870066,0.0005339495,0.0003855016,0.0008504911,0.0003973508,0.0002415693],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001709468,"about_ca_system_score_gemma":0.0001789752,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002421451,"about_ca_topic_score_gemma":0.003204521,"domain_scores_codex":[0.9995708,0.0001319575,0.00002200742,0.0001733765,0.00004699265,0.00005493317],"domain_scores_gemma":[0.9991322,0.0001936227,0.0002594182,0.0001315468,0.0001286359,0.0001546111],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005398893,0.00006906557,0.8267992,0.00007934977,0.0002283103,0.0002593401,0.001595795,0.001336015,0.1543621,0.0004726714,0.0003611498,0.01389714],"study_design_scores_gemma":[0.00000563816,0.0001246912,0.9920533,0.00001546695,0.00004137141,0.0002333679,0.0009009728,0.002626251,0.002752433,0.0005392379,0.0006891498,0.00001820888],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979804,0.00011036,0.001398086,0.00001884608,0.000007261267,0.000002859047,0.0002389038,0.000007816383,0.0002354472],"genre_scores_gemma":[0.9986053,0.00005208765,0.0008577689,0.0000247955,0.000006843185,0.000007094145,0.0003042782,0.000009390331,0.0001325225],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002421451,"threshold_uncertainty_score":0.004996777,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008537313927573262,"score_gpt":0.2212833638392658,"score_spread":0.2127460499116925,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}