{"id":"W3217058346","doi":"10.1038/s41467-021-27191-x","title":"Cross-feeding between intestinal pathobionts promotes their overgrowth during undernutrition","year":2021,"lang":"en","type":"article","venue":"Nature Communications","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":46,"is_retracted":false,"has_abstract":true,"ca_institutions":"Michael Smith Health Research BC; Canada's Michael Smith Genome Sciences Centre; Canadian Institute for Advanced Research; University of British Columbia","funders":"Canadian Institutes of Health Research; Killam Trusts; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Canadian Association of Gastroenterology; National Science Foundation; Government of Canada; Canadian Institute for Advanced Research; Michael Smith Health Research BC","keywords":"Enterobacteriaceae; Malnutrition; Mucin; Biology; Microbiology; Context (archaeology); Bacteria; Gut flora; Medicine; Immunology; Internal medicine; Escherichia coli; Biochemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002696285,0.0002711151,0.0003819539,0.0003271704,0.0002322342,0.0005611994,0.00009584452,0.0002884835,0.0007017429],"category_scores_gemma":[0.0005378615,0.0002063987,0.000245574,0.0003201707,0.0002030293,0.0002766855,0.0007097255,0.0005688903,0.0002192179],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001803219,"about_ca_system_score_gemma":0.0002611293,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009500359,"about_ca_topic_score_gemma":0.001408935,"domain_scores_codex":[0.9996469,0.00007480512,0.00001969431,0.00009940728,0.00006958084,0.0000895893],"domain_scores_gemma":[0.999544,0.00005259305,0.0001923858,0.00003928435,0.00005140777,0.0001203229],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001227119,0.00005946416,0.08906795,0.0001464791,0.00007363383,0.00033908,0.0002304561,0.0001099032,0.8989635,0.00008842567,0.0002803483,0.009413727],"study_design_scores_gemma":[0.00001405831,0.0006401403,0.8919379,0.00005775238,0.00008101537,0.00121338,0.0007295348,0.0007266532,0.1008668,0.0002056364,0.003511194,0.0000159188],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971099,0.00166719,0.0005104904,0.00008928883,0.00001438897,0.000006169797,0.0002734305,0.00002142356,0.0003076928],"genre_scores_gemma":[0.997051,0.0009529567,0.000949647,0.00009013739,0.00001088303,0.00001200683,0.000523,0.00001126522,0.0003989774],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009500359,"threshold_uncertainty_score":0.002347589,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02447571281365089,"score_gpt":0.3254532233827586,"score_spread":0.3009775105691077,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}