{"id":"W3217233642","doi":"10.3389/fpls.2021.766389","title":"Centromere-Specific Retrotransposons and Very-Long-Chain Fatty Acid Biosynthesis in the Genome of Yellowhorn (Xanthoceras sorbifolium, Sapindaceae), an Oil-Producing Tree With Significant Drought Resistance","year":2021,"lang":"en","type":"article","venue":"Frontiers in Plant Science","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Université Laval","funders":"Fundamental Research Funds for the Central Universities; Beijing Forestry University; National Forestry and Grassland Administration; National Natural Science Foundation of China","keywords":"Retrotransposon; Genome; Biology; Genetics; Genome evolution; Centromere; Gene; Contig; Genome project; Segmental duplication; GC-content; Sequence assembly; Reference genome; Gene family; Chromosome; Transposable element; Transcriptome; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007538457,0.0001665421,0.0002655514,0.00006192763,0.0003179605,0.0001001323,0.0005411243,0.00006122814,0.00002729424],"category_scores_gemma":[0.00005711179,0.00006991592,0.00003727215,0.001687752,0.0005367479,0.0002123665,0.00004381407,0.0001624143,8.371318e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006090018,"about_ca_system_score_gemma":0.00007075725,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001208163,"about_ca_topic_score_gemma":0.004406073,"domain_scores_codex":[0.9979634,0.0001638569,0.0002953219,0.0006828989,0.0004533329,0.0004411417],"domain_scores_gemma":[0.9994323,0.0001113591,0.0001048372,0.000196478,0.00005682574,0.00009814538],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001393358,0.0002084457,0.1300761,0.00002401819,0.000009513253,0.00009715442,0.003185935,0.00007906323,0.8566577,0.0002947026,0.00005734416,0.009170651],"study_design_scores_gemma":[0.0002319634,0.0001239646,0.9504637,0.0001122878,0.00001241831,0.00002407085,0.003705462,0.0002370134,0.04344362,0.0002696415,0.001131439,0.0002444133],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961429,0.001196184,0.0001825504,0.001627135,0.0001469022,0.0001508396,0.0002512668,0.00001315629,0.000289062],"genre_scores_gemma":[0.9945322,0.0006725925,0.004565686,0.00005499737,0.00006086951,0.00001262906,0.00003939969,0.000001506734,0.00006018094],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8203876,"threshold_uncertainty_score":0.2851089,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0132028860907712,"score_gpt":0.1899122363228649,"score_spread":0.1767093502320937,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}