{"id":"W3217282564","doi":"10.1099/mgen.0.000681","title":"Genome evolution drives transcriptomic and phenotypic adaptation in Pseudomonas aeruginosa during 20 years of infection","year":2021,"lang":"en","type":"article","venue":"Microbial Genomics","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"Canadian Institutes of Health Research; Health Research Council of New Zealand; Otago Medical Research Foundation; Cystic Fibrosis Canada","keywords":"Biology; Transcriptome; Pseudomonas aeruginosa; Phenotype; Gene; Genetics; Microbiology; Genome; Experimental evolution; Bacteria; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002933605,0.0001689423,0.0003552601,0.0004694318,0.0002825745,0.0005445334,0.0001712556,0.0005617411,0.0005712699],"category_scores_gemma":[0.000832874,0.0001877543,0.0002714464,0.0005155455,0.0002866398,0.0004098358,0.0005370867,0.0004672381,0.0002070922],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002715258,"about_ca_system_score_gemma":0.0001427598,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006331598,"about_ca_topic_score_gemma":0.0007500273,"domain_scores_codex":[0.9997621,0.00003494212,0.00001349044,0.00008235951,0.0000530684,0.00005405072],"domain_scores_gemma":[0.999587,0.0001021184,0.0001420778,0.0000276621,0.00007472507,0.00006650763],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003134718,0.0000393162,0.05007772,0.00007058812,0.00005444036,0.0005350531,0.0005071806,0.0003436995,0.9421113,0.0001456315,0.00009278129,0.005708776],"study_design_scores_gemma":[0.000005326033,0.0002529254,0.9739751,0.0000167634,0.00004804203,0.000869901,0.0005775549,0.001148836,0.02084298,0.0002347887,0.002008194,0.00001967767],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981357,0.0004628471,0.0005637737,0.00006623744,0.00000531037,0.000005462593,0.0004006231,0.00001268681,0.0003472758],"genre_scores_gemma":[0.9975482,0.0003813518,0.000528852,0.0001283784,0.00001401558,0.00002144391,0.001045048,0.00001357455,0.0003191998],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006331598,"threshold_uncertainty_score":0.001970112,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006253384314490761,"score_gpt":0.1911467998509393,"score_spread":0.1848934155364486,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}