{"id":"W372965173","doi":"10.1371/journal.ppat.1004805","title":"The Role of Horizontal Gene Transfer in the Evolution of the Oomycetes","year":2015,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":97,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Institute for Advanced Research","funders":"","keywords":"Horizontal gene transfer; Biology; Gene; Evolutionary biology; Genome; Niche; Genetics; Genome evolution; Horizontal transmission; Gene transfer; Ecology; Virus","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000218654,0.00008554701,0.00009185426,0.00001385344,0.00005718067,0.000006313541,0.0003073432,0.00006256178,0.000001250423],"category_scores_gemma":[0.0001010813,0.00004205886,0.000111329,0.0001031536,0.00009771565,0.000002231222,0.00004387675,0.00005418045,0.00000130403],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001208188,"about_ca_system_score_gemma":0.000100817,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002860249,"about_ca_topic_score_gemma":0.0001113339,"domain_scores_codex":[0.9992256,0.0001419291,0.000169994,0.0001262682,0.000189924,0.0001463131],"domain_scores_gemma":[0.999504,0.00002615601,0.00004026277,0.0003278993,0.00006926486,0.00003236714],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000063012,0.00009730349,0.03815611,0.000004880074,0.00002192972,0.000001107499,0.0001267523,0.0000111287,0.9607047,0.0004134658,0.0000477241,0.0003518586],"study_design_scores_gemma":[0.0004323608,0.0003166899,0.08649244,0.00002082963,0.00008794011,0.00001711639,0.001964792,0.000189122,0.9068829,0.0005340998,0.002928426,0.0001332951],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9930952,0.004943776,0.00003132959,0.00004548681,0.00004930355,0.0001900456,0.0007221345,0.000002304402,0.000920422],"genre_scores_gemma":[0.9996768,0.0001239001,0.0000270116,0.00002322742,0.00007214121,0.00002023308,0.00003235445,0.000007380742,0.00001695474],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05382184,"threshold_uncertainty_score":0.1715111,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00964888609511693,"score_gpt":0.1952417510398951,"score_spread":0.1855928649447782,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}