{"id":"W391137112","doi":"10.1371/journal.pone.0123691","title":"Do Housekeeping Genes Exist?","year":2015,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Molecular Biology Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":69,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"China Scholarship Council; Mitacs; Simon Fraser University; Compute Canada","keywords":"Housekeeping gene; Gene; Biology; Genome; Human genome; Computational biology; Genetics; Housekeeping; Transcriptome; Gene expression profiling; Gene nomenclature; Normalization (sociology); Gene expression; Evolutionary biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000111133,0.00008636595,0.00009594555,0.00002041312,0.00004242195,0.00001385216,0.000162255,0.0001199356,0.000007640589],"category_scores_gemma":[0.00004391207,0.00008699085,0.0000375369,0.00005282032,0.00004943538,0.000001173037,0.0001028873,0.00005214792,0.00003623613],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007962116,"about_ca_system_score_gemma":0.00003485067,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000006840038,"about_ca_topic_score_gemma":0.000003638574,"domain_scores_codex":[0.9993826,0.00002714476,0.0001066069,0.0002415796,0.00009235788,0.0001497163],"domain_scores_gemma":[0.9994025,0.000002455886,0.00003968188,0.0003767005,0.00008693551,0.00009172186],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001248652,0.0002608307,0.002123178,0.000007285471,0.00006744979,0.000001316016,0.00001111459,0.000001815962,0.9935054,0.0009191144,0.001748021,0.00134205],"study_design_scores_gemma":[0.0002036109,0.0001833336,0.0002148663,0.00001503604,0.00003211438,0.000004762064,0.00001819113,0.00001473621,0.9710735,0.0009754787,0.02709966,0.0001647278],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9829028,0.001852215,0.004148203,0.0003829332,0.00001713783,0.0002248984,0.00001151123,0.00007188357,0.01038847],"genre_scores_gemma":[0.9764622,0.0003576698,0.02147213,0.0005061262,0.0002274548,0.0001150498,0.0001083118,0.00002422778,0.0007267893],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02535164,"threshold_uncertainty_score":0.3547384,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07863987253676363,"score_gpt":0.2779822484999431,"score_spread":0.1993423759631794,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}