{"id":"W4200038919","doi":"10.1016/j.isci.2021.103585","title":"Crosstalk between the ancestral type VII secretion system ESX-4 and other T7SS in Mycobacterium marinum","year":2021,"lang":"en","type":"article","venue":"iScience","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"National Key Research and Development Program of China; Canadian Institutes of Health Research","keywords":"Mycobacterium marinum; Secretion; ESAT-6; Cell biology; Crosstalk; Biology; Microbiology; Mutant; Phagocytosis; Mycobacterium tuberculosis; Mycobacterium; Genetics; Bacterial protein; Biochemistry; Bacteria; Tuberculosis; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006408058,0.00006339872,0.0001619465,0.00003471696,0.00007844993,0.00003522208,0.00008976166,0.00005353571,0.00004555133],"category_scores_gemma":[0.000311653,0.00003577541,0.00002100689,0.0003352472,0.0002588159,0.00007462023,0.00008125151,0.0001643332,0.00002733246],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005325889,"about_ca_system_score_gemma":0.0001153431,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003320916,"about_ca_topic_score_gemma":0.0001466975,"domain_scores_codex":[0.9990389,0.0001225422,0.0001473749,0.0002354277,0.0001596815,0.0002960552],"domain_scores_gemma":[0.9994964,0.0001241384,0.00002823138,0.0001958518,0.00005449863,0.0001008803],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00002958365,0.00001168943,0.9779791,0.00006193027,0.000006236203,0.00005138211,0.0001788069,0.000003588684,0.0172379,0.0002860556,0.0003261169,0.003827563],"study_design_scores_gemma":[0.0002230919,0.0001025284,0.9853469,0.00007264767,0.000006273001,0.000116938,0.0002745666,0.0005555644,0.000915168,0.00005937722,0.01227747,0.0000495031],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9912829,0.0004135233,0.00005449213,0.004617057,0.0001262515,0.0001135864,0.000007267228,0.00001648752,0.003368442],"genre_scores_gemma":[0.9986458,0.00004800289,0.0001098801,0.0005091809,0.0001343865,0.000006176263,0.000004644222,0.000004557229,0.0005373509],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01632273,"threshold_uncertainty_score":0.1458879,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04721066214145,"score_gpt":0.3470171604367117,"score_spread":0.2998064982952617,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}