{"id":"W4200105494","doi":"10.3389/fgene.2021.797490","title":"Whole Genome Methylation Analysis Reveals Role of DNA Methylation in Cow’s Ileal and Ileal Lymph Node Responses to Mycobacterium avium subsp. paratuberculosis Infection","year":2021,"lang":"en","type":"article","venue":"Frontiers in Genetics","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada; Génome Québec; Dairy Farmers of Canada","keywords":"Paratuberculosis; DNA methylation; Biology; Genome; Methylation; Microbiology; Mycobacterium; Lymph node; DNA; Genetics; Gene; Immunology; Bacteria; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001384252,0.00009509672,0.0002055628,0.0003422021,0.0001582567,0.0002395653,0.0001095003,0.0002113672,0.0007528856],"category_scores_gemma":[0.0002345,0.000121129,0.0001363251,0.0002444674,0.0001097085,0.00009485744,0.0001620124,0.0001615065,0.0001039324],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001467886,"about_ca_system_score_gemma":0.0001079891,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003623248,"about_ca_topic_score_gemma":0.005898079,"domain_scores_codex":[0.9999095,0.00001174366,0.00000481371,0.00003514842,0.0000186238,0.00002018901],"domain_scores_gemma":[0.9999088,0.00001762972,0.00003468213,0.000006456569,0.00001676624,0.00001563498],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007288671,0.00002265335,0.1095251,0.0001046446,0.0001001813,0.0001071636,0.0005056704,0.0001620446,0.8787941,0.00003434633,0.0001063689,0.009809004],"study_design_scores_gemma":[0.000006686912,0.000143489,0.9772239,0.00000923774,0.00006764494,0.0002365593,0.0002732823,0.0005897993,0.02051735,0.00004234626,0.0008828425,0.000006967746],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986327,0.0004822791,0.0003306775,0.00002091432,0.000002053247,0.000003229943,0.000326295,0.000006433403,0.0001953178],"genre_scores_gemma":[0.9981817,0.0002312115,0.0004597528,0.00003311205,0.00000235026,0.000009237486,0.0005424408,0.000004781457,0.0005354649],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003623248,"threshold_uncertainty_score":0.007204294,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01422883974382118,"score_gpt":0.2848899813139414,"score_spread":0.2706611415701202,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}