{"id":"W4200139682","doi":"10.1089/phage.2021.0013","title":"Phage Annotation Guide: Guidelines for Assembly and High-Quality Annotation","year":2021,"lang":"en","type":"article","venue":"PHAGE","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":75,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Biotechnology and Biological Sciences Research Council","keywords":"Annotation; Sequence assembly; Genome; Sequence (biology); Genome project; Genomics; Computational biology; DNA sequencing; Whole genome sequencing; Biology; World Wide Web; Information retrieval; Genetics; Computer science; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.006365579,0.003526436,0.003512855,0.008485404,0.003420366,0.004949193,0.005577016,0.004037957,0.08172093],"category_scores_gemma":[0.01432145,0.005843722,0.003031851,0.007222838,0.00100607,0.00264191,0.003250686,0.006089585,0.1719721],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001594164,"about_ca_system_score_gemma":0.005010215,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006739178,"about_ca_topic_score_gemma":0.01305545,"domain_scores_codex":[0.9950666,0.001179242,0.0008195859,0.0006810526,0.001883512,0.0003700383],"domain_scores_gemma":[0.992074,0.002139324,0.000524752,0.00155666,0.003263454,0.0004417041],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0006150249,0.0002149515,0.0009425603,0.003674035,0.0001627391,0.0004582803,0.0005571505,0.001344057,0.06897928,0.00332507,0.8285223,0.09120467],"study_design_scores_gemma":[0.00009436526,0.0001073723,0.001465714,0.0005604151,0.00007960111,0.0008650946,0.0001392736,0.001902565,0.0240919,0.00329108,0.9672441,0.0001585506],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.005046499,0.008640879,0.4988506,0.002452099,0.002602392,0.003934707,0.3161848,0.130756,0.03153196],"genre_scores_gemma":[0.004119349,0.003357293,0.5728168,0.001588263,0.0002634851,0.004719466,0.3600174,0.02222864,0.03088928],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.08172093,"threshold_uncertainty_score":0.2733837,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06642794180230718,"score_gpt":0.3861508104437872,"score_spread":0.31972286864148,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}