{"id":"W4200187845","doi":"10.1371/journal.pntd.0010076","title":"Genetic diversity of Leptospira isolates in Lao PDR and genome analysis of an outbreak strain","year":2021,"lang":"en","type":"article","venue":"PLoS neglected tropical diseases","topic":"Leptospirosis research and findings","field":"Immunology and Microbiology","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"Fonds de Recherche du Québec - Santé; Wellcome; Institut Pasteur; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada; Natural Sciences and Engineering Research Council of Canada; Wellcome Trust","keywords":"Leptospira; Biology; Outbreak; Genotype; Genetic diversity; Leptospira interrogans; Molecular epidemiology; Genome; Virulence; Multilocus sequence typing; Typing; Serotype; Genetics; Virology; Gene; Population; Medicine; Environmental health","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003551676,0.000298415,0.0001920042,0.0008805622,0.0003690457,0.0006321004,0.0002041183,0.0002281601,0.0006861188],"category_scores_gemma":[0.0004791118,0.0001191066,0.0003622439,0.001076182,0.000344678,0.0001519265,0.000353668,0.0003192784,0.0001548921],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005209208,"about_ca_system_score_gemma":0.0003240498,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005273734,"about_ca_topic_score_gemma":0.005169754,"domain_scores_codex":[0.9997009,0.0000464943,0.00002873874,0.00009496132,0.00004564558,0.00008325193],"domain_scores_gemma":[0.9994841,0.00008900265,0.0002178621,0.00003453205,0.00008994817,0.00008444992],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004571773,0.00008616396,0.922044,0.0000841459,0.00008292734,0.0005682734,0.0009820187,0.0002689507,0.0693927,0.00004102563,0.000222911,0.005769731],"study_design_scores_gemma":[0.00001140506,0.0002257009,0.9935139,0.00001734188,0.00005194172,0.0008721448,0.001007411,0.0003777308,0.003215091,0.0000232442,0.0006759386,0.000008133338],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989005,0.00004735421,0.0001022475,0.00001656791,0.000001426867,0.000007040549,0.0007560347,0.000004965318,0.000163689],"genre_scores_gemma":[0.9972008,0.0000679906,0.0003719886,0.00003955122,0.000004790865,0.00001272663,0.002213039,0.000004871984,0.00008411698],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005273734,"threshold_uncertainty_score":0.01048607,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01330465536916063,"score_gpt":0.2309519390157879,"score_spread":0.2176472836466273,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}