{"id":"W4200284288","doi":"10.3389/fmicb.2021.789596","title":"Genomic Epidemiology and Evolution of Scallion Mosaic Potyvirus From Asymptomatic Wild Japanese Garlic","year":2021,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Japan Society for the Promotion of Science; Ministry of Education, Culture, Sports, Science and Technology; Research Organization of Information and Systems","keywords":"Biology; Potyvirus; Phylogenetic tree; Genome; Genetics; Turnip mosaic virus; Potyviridae; Virology; Phylogenetics; Whole genome sequencing; Virus; Gene; Plant virus","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001493022,0.0002571403,0.0001849659,0.0007975788,0.0004507532,0.0004261041,0.0001634376,0.0002979755,0.0002460489],"category_scores_gemma":[0.0002131193,0.0001753109,0.0001599212,0.0005139802,0.0003309406,0.0003022438,0.0002572295,0.0001982677,0.00006229857],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003702013,"about_ca_system_score_gemma":0.0002238919,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006962605,"about_ca_topic_score_gemma":0.01189885,"domain_scores_codex":[0.999844,0.00001327544,0.00001503679,0.00006297467,0.00003141213,0.00003326181],"domain_scores_gemma":[0.9997478,0.00002203762,0.00009568551,0.0000111452,0.00004497719,0.00007833493],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002761736,0.00008116926,0.745842,0.0001216345,0.00004223953,0.002098937,0.002795478,0.0001169884,0.2418892,0.0000704843,0.00009485504,0.006570793],"study_design_scores_gemma":[0.000002870428,0.00008585824,0.9964358,0.000004872556,0.00002071827,0.00086334,0.0009420078,0.00007723089,0.001340302,0.00001193191,0.0002109002,0.000004340334],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997608,0.00006931945,0.00004974281,0.000004010791,8.292932e-7,0.000003676432,0.00004255321,0.000001336603,0.00006780549],"genre_scores_gemma":[0.9993221,0.0001192396,0.0001310824,0.00001133047,0.000002444026,0.000004054957,0.0003143559,0.000001410817,0.00009400787],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006962605,"threshold_uncertainty_score":0.01384413,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0187772477690593,"score_gpt":0.2387401221512254,"score_spread":0.2199628743821661,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}