{"id":"W4200296575","doi":"10.3390/genes13010017","title":"Haplotype-Based Single-Step GWAS for Yearling Temperament in American Angus Cattle","year":2021,"lang":"en","type":"article","venue":"Genes","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Universidade Estadual do Sudoeste da Bahia; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Purdue University","keywords":"Linkage disequilibrium; Biology; Genome-wide association study; Haplotype; Single-nucleotide polymorphism; Genetic architecture; Genetics; Trait; Candidate gene; Quantitative trait locus; Genetic association; SNP; Evolutionary biology; Gene; Allele; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001178776,0.0002830189,0.0003941679,0.0005733652,0.0005022608,0.0005014086,0.0002694434,0.0002631833,0.001020042],"category_scores_gemma":[0.001027317,0.000182908,0.0005988185,0.001071164,0.000191598,0.000191692,0.0002779856,0.0003000271,0.0001018123],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001685741,"about_ca_system_score_gemma":0.0002036317,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005079066,"about_ca_topic_score_gemma":0.01788496,"domain_scores_codex":[0.9993945,0.0002650043,0.0000411434,0.0001963482,0.00005309839,0.00004990121],"domain_scores_gemma":[0.999102,0.0003836982,0.0001991324,0.0001238756,0.00008682143,0.0001044415],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006389706,0.00004353266,0.978516,0.00003865547,0.0009298865,0.0001833091,0.0001995508,0.0005998783,0.009400877,0.00006680137,0.0001658971,0.009216648],"study_design_scores_gemma":[0.00001446845,0.00008078509,0.9975534,0.000005284308,0.0002855906,0.0001440337,0.00006198268,0.00130383,0.000236159,0.00004465527,0.0002649551,0.000004965359],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986352,0.0001483334,0.0008434425,0.00001444193,0.000004221248,0.000004866297,0.0002473593,0.000009817897,0.00009224667],"genre_scores_gemma":[0.9975794,0.00009299268,0.001608176,0.00001854966,0.000009711021,0.00001633474,0.0005068716,0.000007121464,0.0001609304],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005079066,"threshold_uncertainty_score":0.01009899,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01767336289537866,"score_gpt":0.2565994463495004,"score_spread":0.2389260834541217,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}