{"id":"W4200296575","doi":"10.3390/genes13010017","title":"Haplotype-Based Single-Step GWAS for Yearling Temperament in American Angus Cattle","year":2021,"lang":"en","type":"article","venue":"Genes","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Universidade Estadual do Sudoeste da Bahia; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Purdue University","keywords":"Linkage disequilibrium; Biology; Genome-wide association study; Haplotype; Single-nucleotide polymorphism; Genetic architecture; Genetics; Trait; Candidate gene; Quantitative trait locus; Genetic association; SNP; Evolutionary biology; Gene; Allele; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000551903,0.00009888345,0.0001127757,0.00002134776,0.00003612773,0.00001597613,0.00008854983,0.00005627588,0.0000156671],"category_scores_gemma":[0.00003858727,0.0001024568,0.0000588192,0.00007299527,0.00005600661,8.69299e-7,0.00003451351,0.00003368793,0.000005714309],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001285343,"about_ca_system_score_gemma":0.000111754,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004209195,"about_ca_topic_score_gemma":0.0002128475,"domain_scores_codex":[0.999323,0.00003019453,0.0001283339,0.0002675786,0.00005518243,0.0001957857],"domain_scores_gemma":[0.99962,0.000017252,0.00003747592,0.0002249026,0.00005431298,0.00004603061],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001240249,0.0003553521,0.01996806,0.00006153763,0.0000584561,0.00000247502,0.0001368832,0.01097017,0.8798795,0.0004566431,0.001434678,0.08655223],"study_design_scores_gemma":[0.00124305,0.0008040386,0.06210849,0.00002798692,0.00002856888,0.000007447763,0.000455055,0.0001336454,0.8081431,0.0002438342,0.1264349,0.0003699251],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9771456,0.002140851,0.01977937,0.0002339585,0.0002072355,0.0001469197,0.00002439202,0.000009866982,0.0003118787],"genre_scores_gemma":[0.9208971,0.0000169516,0.07771928,0.0004373335,0.0002185384,0.00004185245,0.0001054599,0.00002146103,0.0005420122],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1250002,"threshold_uncertainty_score":0.4178066,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01767336289537866,"score_gpt":0.2565994463495004,"score_spread":0.2389260834541217,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}