{"id":"W4200370404","doi":"10.20944/preprints202112.0283.v1","title":"Snapshot of &lt;em&gt;Mycobacterium tuberculosis&lt;/em&gt; Phylogenetics from an Indian State of Arunachal Pradesh Bordering China","year":2021,"lang":"en","type":"preprint","venue":"Preprints.org","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University Health Centre","funders":"","keywords":"rpoB; Mycobacterium tuberculosis; Biology; Drug resistance; Tuberculosis; Phylogenetic tree; Genotype; SNP; Multilocus sequence typing; Multiple drug resistance; Microbiology; Genetics; Virology; Gene; Single-nucleotide polymorphism; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003291188,0.0002754007,0.0002450417,0.002201073,0.0008519276,0.0005451589,0.0005143861,0.000345612,0.001052415],"category_scores_gemma":[0.0006624019,0.0001903407,0.0002434196,0.00341,0.0003358182,0.0002583831,0.0006236688,0.0003810588,0.0003991602],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005405289,"about_ca_system_score_gemma":0.001037187,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.06032613,"about_ca_topic_score_gemma":0.1012468,"domain_scores_codex":[0.9997576,0.00003492164,0.0000216263,0.00006290994,0.00006068868,0.00006240424],"domain_scores_gemma":[0.9991871,0.00007703047,0.0002027587,0.00006960457,0.0002917565,0.0001718671],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004365878,0.0001235655,0.8949403,0.0006148487,0.0001620833,0.002675593,0.007118148,0.001376163,0.03577757,0.0003838878,0.007007951,0.04938333],"study_design_scores_gemma":[0.000003520191,0.00003975146,0.9918832,0.00003222507,0.00003158967,0.0006069672,0.00146333,0.0004341613,0.0008896525,0.00003544663,0.004567882,0.00001222594],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9800345,0.0005785915,0.000560495,0.0002201442,0.00001656008,0.00004009285,0.01642684,0.0001018445,0.002020862],"genre_scores_gemma":[0.9675719,0.0005872014,0.003252003,0.00015079,0.00002356173,0.00003869812,0.02713692,0.00002405254,0.001215029],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06032613,"threshold_uncertainty_score":0.11995,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06072094362332769,"score_gpt":0.3497862115093378,"score_spread":0.2890652678860101,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}