{"id":"W4200371186","doi":"10.1101/2021.12.05.21267216","title":"Genetic Subgroups Inform on Pathobiology in Adult and Pediatric Burkitt Lymphoma","year":2021,"lang":"en","type":"preprint","venue":"medRxiv","topic":"Lymphoma Diagnosis and Treatment","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia; Spinal Cord Injury BC; Simon Fraser University","funders":"","keywords":"Biology; Somatic hypermutation; Lymphoma; Germline mutation; Cancer research; Gene; Mutation; Genetics; B cell; Immunology; Antibody","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001378791,0.0003893455,0.0007292346,0.0003076209,0.00003446891,0.00003944273,0.0001152629,0.0004654872,0.00006217063],"category_scores_gemma":[0.0001717231,0.0003134531,0.0001531758,0.0001869818,0.00005321933,0.00002172783,0.0003426083,0.0002324202,0.00004439669],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002844674,"about_ca_system_score_gemma":0.0003277679,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004099041,"about_ca_topic_score_gemma":0.0001867991,"domain_scores_codex":[0.9981247,0.00007226396,0.0004951787,0.0006995965,0.0002386965,0.0003696098],"domain_scores_gemma":[0.9987729,0.000141362,0.0001540587,0.0006279896,0.0001086595,0.0001950665],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00007875098,0.0006148388,0.9759458,0.0003489277,0.00006672446,0.001725098,0.0003698913,0.000008918469,0.00002804684,0.00007338178,0.00007988897,0.02065974],"study_design_scores_gemma":[0.00346948,0.0003629096,0.9943981,0.000246163,0.0002173872,0.0001638668,0.00007436643,0.00008192329,0.0003270075,0.00007478405,0.0003296538,0.0002543431],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9934072,0.003825626,0.00000302926,0.000505661,0.0004973541,0.0006020646,0.00002061466,0.00004590252,0.001092548],"genre_scores_gemma":[0.9876704,0.01021,0.0004111294,0.000814208,0.0003494713,0.0002874669,0.0001411162,0.00003396828,0.00008227307],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02040539,"threshold_uncertainty_score":0.9999318,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0131561935130976,"score_gpt":0.2499026847086873,"score_spread":0.2367464911955897,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}