{"id":"W4200406200","doi":"10.21203/rs.3.rs-1159614/v1","title":"Context-specific emergence and growth of the SARS-CoV-2 Delta variant","year":2021,"lang":"en","type":"preprint","venue":"Research Square","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":false,"ca_institutions":"Toronto General Hospital; BlueDot (Canada)","funders":"Medical Research Council; Canadian Institutes of Health Research; University of Oxford; University of Warwick; Vlaamse regering; Fonds De La Recherche Scientifique - FNRS; Directorate for Biological Sciences; National Institutes of Health; Fast Grants; Natural Environment Research Council; UK Research and Innovation; Wellcome Trust; KU Leuven; National Institute for Health and Care Research; Rockefeller Foundation; Fondation Botnar; European Commission; Biotechnology and Biological Sciences Research Council; Bill and Melinda Gates Foundation","keywords":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Delta; Context (archaeology); Coronavirus disease 2019 (COVID-19); 2019-20 coronavirus outbreak; Virology; Pandemic; Biology; Geography; Medicine; Outbreak; Engineering; Internal medicine; Infectious disease (medical specialty)","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003596778,0.0002402442,0.0003289121,0.0003773664,0.0002946696,0.001070878,0.0002331503,0.0005428517,0.005117151],"category_scores_gemma":[0.002131862,0.0001755975,0.0002499064,0.0004054885,0.0002572953,0.0006175201,0.000533309,0.000754199,0.001014529],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004223009,"about_ca_system_score_gemma":0.0003875587,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002058114,"about_ca_topic_score_gemma":0.002138205,"domain_scores_codex":[0.9996386,0.00004859421,0.00001562468,0.0001272555,0.00004445388,0.0001255023],"domain_scores_gemma":[0.9992955,0.0001979879,0.000162188,0.00009952532,0.0001135142,0.00013128],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.004393004,0.0003952056,0.372053,0.0002261289,0.0001470568,0.002312314,0.001191858,0.003764347,0.5431273,0.01083263,0.006150941,0.05540627],"study_design_scores_gemma":[0.0001496761,0.0009081919,0.8825943,0.0001135847,0.0001430103,0.006126397,0.004110006,0.02044223,0.05500967,0.01056759,0.01972118,0.0001140297],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955578,0.0007433474,0.0006740991,0.0001785864,0.00003261288,0.000009169569,0.0008811164,0.0000177773,0.001905484],"genre_scores_gemma":[0.9979172,0.0002581438,0.0003271488,0.0000756442,0.00001974383,0.00000735182,0.0006197044,0.00001573041,0.0007593642],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005117151,"threshold_uncertainty_score":0.01711857,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1296887476136715,"score_gpt":0.4183195640630441,"score_spread":0.2886308164493726,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}