{"id":"W4200408732","doi":"10.1101/2021.12.13.21267725","title":"Vaccine breakthrough and the invasion dynamics of SARS-CoV-2 variants","year":2021,"lang":"en","type":"preprint","venue":"medRxiv","topic":"SARS-CoV-2 and COVID-19 Research","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; Centers for Disease Control and Prevention; C3.ai Digital Transformation Institute; Flu Lab; Princeton University; Google; Microsoft; James S. McDonnell Foundation; National Science Foundation","keywords":"Vaccination; Transmission (telecommunications); Pandemic; Immunity; Virology; Coronavirus disease 2019 (COVID-19); Biology; Immunology; Disease; Vaccine efficacy; Herd immunity; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); Medicine; Immune system; Infectious disease (medical specialty); Computer science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007646726,0.0004661084,0.0006441223,0.000403702,0.0003519261,0.001238765,0.0003079556,0.000940774,0.004935383],"category_scores_gemma":[0.002932664,0.0002201183,0.0005494939,0.0002856979,0.0004775897,0.001068061,0.0006787581,0.0007281157,0.0006752219],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008437302,"about_ca_system_score_gemma":0.0005516315,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004648142,"about_ca_topic_score_gemma":0.002645695,"domain_scores_codex":[0.999726,0.00009820092,0.000007372398,0.00006124316,0.00003093263,0.0000761343],"domain_scores_gemma":[0.9992093,0.0003423053,0.0002166474,0.00004983699,0.00004644614,0.0001354209],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.001409017,0.0003735865,0.08877382,0.0004272655,0.0003063341,0.001896317,0.0007315173,0.6224916,0.06138078,0.1783246,0.01118689,0.03269833],"study_design_scores_gemma":[0.00008955012,0.0003987997,0.03997344,0.00005538764,0.00009032471,0.0007102428,0.0006837279,0.8849317,0.004869201,0.05964493,0.008479838,0.00007276265],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9578147,0.00195904,0.02473439,0.002642506,0.0001439297,0.00002080987,0.0006268939,0.0001415335,0.01191621],"genre_scores_gemma":[0.992289,0.0007395855,0.001685142,0.0001277331,0.00004331819,0.000008942368,0.0002377695,0.00002780554,0.004840616],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004935383,"threshold_uncertainty_score":0.01651049,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05525370224717912,"score_gpt":0.3478484567901898,"score_spread":0.2925947545430107,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}