{"id":"W4200417643","doi":"10.1093/mmy/myab079","title":"Four genomic clades of <i>Candida auris</i> identified in Canada, 2012–2019","year":2021,"lang":"en","type":"article","venue":"Medical Mycology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Ontario; BC Centre for Disease Control; University of Toronto; Ste. Anne's Hospital; Alberta Hospital Edmonton; University of Alberta; University of Manitoba; Public Health Agency of Canada","funders":"Public Health Agency of Canada","keywords":"Candida auris; Clade; Biology; Outbreak; Phylogenetic tree; Microbiology; Virology; Genetics; Gene; Antifungal","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003929533,0.0001053581,0.0005434784,0.0000561097,0.00002331383,0.000002408147,0.000126816,0.0001955587,0.00503767],"category_scores_gemma":[0.001096606,0.00009272315,0.00007220064,0.0002065843,0.0001590149,0.00002662659,0.00007732835,0.0003807238,0.00003352971],"about_ca_system_candidate":true,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003285024,"about_ca_system_score_gemma":0.006445011,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.2851396,"about_ca_topic_score_gemma":0.9391232,"domain_scores_codex":[0.998301,0.0001083782,0.0004887673,0.0002960355,0.000458937,0.0003469065],"domain_scores_gemma":[0.9989285,0.0003375633,0.00007283984,0.0003044807,0.00009876666,0.0002577798],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003626441,0.0002265318,0.880506,0.0002380078,0.00007125742,0.003497832,0.00009298787,0.000001504919,0.04129301,0.000412112,0.06916864,0.004129416],"study_design_scores_gemma":[0.001458926,0.00007922095,0.9830167,0.00008564007,0.0000370142,0.0001052451,0.0002353558,0.00003935344,0.003160338,0.0002556128,0.01143901,0.00008754548],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9909741,0.00155187,0.00005733205,0.004085207,0.0004636598,0.0001388158,0.00001565026,0.000008208063,0.002705109],"genre_scores_gemma":[0.9942167,0.0003130804,0.00009214676,0.002317845,0.0001066614,0.000007599154,0.0000262341,0.00001006945,0.002909668],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6539837,"threshold_uncertainty_score":0.9991875,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01138521688849956,"score_gpt":0.2540527476266424,"score_spread":0.2426675307381429,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}