{"id":"W4200417643","doi":"10.1093/mmy/myab079","title":"Four genomic clades of <i>Candida auris</i> identified in Canada, 2012–2019","year":2021,"lang":"en","type":"article","venue":"Medical Mycology","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Ontario; BC Centre for Disease Control; University of Toronto; Ste. Anne's Hospital; Alberta Hospital Edmonton; University of Alberta; University of Manitoba; Public Health Agency of Canada","funders":"Public Health Agency of Canada","keywords":"Candida auris; Clade; Biology; Outbreak; Phylogenetic tree; Microbiology; Virology; Genetics; Gene; Antifungal","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002428984,0.0003685828,0.0002162208,0.001993591,0.00215489,0.00106278,0.0005014837,0.0003833234,0.001772182],"category_scores_gemma":[0.0009374499,0.0002038864,0.000366039,0.002978232,0.0005881268,0.0001926796,0.0007220322,0.0006428567,0.0002818126],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.009917322,"about_ca_system_score_gemma":0.01974432,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9705066,"about_ca_topic_score_gemma":0.9831086,"domain_scores_codex":[0.9996071,0.00001049704,0.00001756428,0.00007057482,0.0001286522,0.0001655808],"domain_scores_gemma":[0.9991013,0.00003287276,0.0001666106,0.00002459664,0.0004435355,0.0002311488],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004527045,0.00003768699,0.9293843,0.000223734,0.00009480445,0.001895487,0.00255205,0.0004579384,0.0140639,0.0007132494,0.009857318,0.04026679],"study_design_scores_gemma":[0.000009153337,0.00003391323,0.9799755,0.0000973912,0.0000513618,0.001353729,0.002782727,0.0003227472,0.001069598,0.00007326472,0.01420994,0.00002066497],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9699583,0.002952316,0.0006593508,0.0008880233,0.00004381644,0.0001062233,0.01761132,0.00007159953,0.007708981],"genre_scores_gemma":[0.9846213,0.001601954,0.001337045,0.0005713299,0.00001403004,0.00002666057,0.009227383,0.00002027858,0.002580011],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02949339,"threshold_uncertainty_score":0.0719555,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01138521688849956,"score_gpt":0.2540527476266424,"score_spread":0.2426675307381429,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}